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Titlebook: Biomolecular Simulations; Methods and Protocol Luca Monticelli,Emppu Salonen Book 2013 Springer Science+Business Media New York 2013 Coarse

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發(fā)表于 2025-3-28 15:16:03 | 只看該作者
Simulation Studies of the Mechanism of Membrane Transportersough coupling the process to various sources of cellular energy, for example, ATP binding and hydrolysis in primary transporters, and pre-established electrochemical gradient of molecular species other than the substrate in the case of secondary transporters. In order to provide efficient energy-cou
42#
發(fā)表于 2025-3-28 19:53:41 | 只看該作者
Molecular Dynamics Simulations of Lipid Bilayers: Simple Recipe of How to Do Itor tool as it grant access to atomic level features of the membrane difficult to access by experimental means. In this chapter we describe step by step how to simulate a membrane .. The explanation comprehends from the initial set up of a membrane system to its analysis passing through the simulatio
43#
發(fā)表于 2025-3-28 23:37:35 | 只看該作者
44#
發(fā)表于 2025-3-29 07:05:29 | 只看該作者
Simulating DNA by Molecular Dynamics: Aims, Methods, and Validationcharacterize. These structural and dynamic effects can be addressed by simulations of DNA sequences in explicit solvent. Here, we present and discuss the state-of-art of B-DNA molecular dynamics simulations with the major force fields in use today. We explain why a critical analysis of the MD trajec
45#
發(fā)表于 2025-3-29 09:50:40 | 只看該作者
46#
發(fā)表于 2025-3-29 12:34:33 | 只看該作者
978-1-4939-5891-7Springer Science+Business Media New York 2013
47#
發(fā)表于 2025-3-29 15:32:46 | 只看該作者
48#
發(fā)表于 2025-3-29 19:46:25 | 只看該作者
Methods in Molecular Biologyhttp://image.papertrans.cn/b/image/188259.jpg
49#
發(fā)表于 2025-3-30 00:34:28 | 只看該作者
50#
發(fā)表于 2025-3-30 07:23:37 | 只看該作者
Ab Initio Molecular Dynamicshe difference between the Car–Parrinello molecular dynamics and AIMD, have been explained. Also a very versatile AIMD code, the CP2K, has been introduced. On the application, the emphasis was on the aqueous systems and chemical reactions. The biochemical applications have not been discussed in depth.
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