Titlebook: Systems Biology and Regulatory Genomics; Joint Annual RECOMB Eleazar Eskin,Trey Ideker,Christopher Workman Conference proceedings 2006 Spr

Banquet

Memorial

無(wú)彈性

nocturnal

Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Element identify all known cell-cycle related TFBMs among its top ranking motifs. Our method can also be directly applied to discriminative motif finding. By utilizing the ChIP-chip data of Lee ., we predicted potential binding motifs of 113 known transcription factors of budding yeast.

先驅(qū)

Improved Duplication Models for Proteome Network Evolution, these models, for .?>?1, are very different from that of the yeast proteome network. We address this problem by introducing a new network growth model that takes into account the sequence similarity between pairs of proteins (as a binary relationship) as well as their interactions. The new model ca

輕觸

火花

Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences,wing two-stage strategy that extends the solvable values of . substantially for the pattern-driven approach: first use an .(2..) algorithm to exhaustively search over all candidate motifs allowing arbitrary don’t care positions but disallowing mismatches, then refine these motifs by allowing a limit

Apogee

An Interaction-Dependent Model for Transcription Factor Binding, majority of cases where the whole genome ChIP experiments have been performed. One possible reason for this is that the DNA binding of a particular transcription factor depends not only on its own motif, but also on synergistic or antagonistic action of neighboring motifs for other transcription fa

出汗

978-3-540-48293-2Springer-Verlag Berlin Heidelberg 2006

painkillers

Systems Biology and Regulatory Genomics978-3-540-48540-7Series ISSN 0302-9743 Series E-ISSN 1611-3349