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Titlebook: Parameter Advising for Multiple Sequence Alignment; Dan DeBlasio,John Kececioglu Book 2017 Springer International Publishing AG 2017 Bioin

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發(fā)表于 2025-3-21 19:13:48 | 只看該作者 |倒序瀏覽 |閱讀模式
書目名稱Parameter Advising for Multiple Sequence Alignment
編輯Dan DeBlasio,John Kececioglu
視頻videohttp://file.papertrans.cn/742/741132/741132.mp4
概述Presents practical approaches to the pervasive question of how to choose parameter settings for sequence alignment.Provides links to proven software implementations that work well on real data.Introdu
叢書名稱Computational Biology
圖書封面Titlebook: Parameter Advising for Multiple Sequence Alignment;  Dan DeBlasio,John Kececioglu Book 2017 Springer International Publishing AG 2017 Bioin
描述.This book develops a new approach called .parameter advising. for finding a parameter setting for a sequence aligner that yields a quality alignment of a given set of input sequences. In this framework, a parameter. advisor. is a procedure that automatically chooses a parameter setting for the input, and has two main ingredients:..(a)???????? the .set .of parameter choices considered by the advisor, and..(b)???????? an .estimator. of alignment accuracy used to rank alignments produced by the aligner...On coupling a parameter advisor with an aligner, once the advisor is trained in a learning phase, the user simply inputs sequences to align, and receives an output alignment from the aligner, where the advisor has automatically selected the parameter setting...The chapters first lay out the foundations of parameter advising, and then cover applications and extensions of advising. The content..??? examines formulations of parameter advising and their .computational complexity.,..??? develops methods for learning good .accuracy estimators.,..??? presents approximation algorithms for finding good sets of .parameter choices., and ..??? assesses .software implementations. of advising that
出版日期Book 2017
關(guān)鍵詞Bioinformatics; Biological sequence analysis; Multiple sequence alignment; Protein sequence alignment; A
版次1
doihttps://doi.org/10.1007/978-3-319-64918-4
isbn_softcover978-3-319-87902-4
isbn_ebook978-3-319-64918-4Series ISSN 1568-2684 Series E-ISSN 2662-2432
issn_series 1568-2684
copyrightSpringer International Publishing AG 2017
The information of publication is updating

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The , Accuracy Estimatork described in Chapter . yields our the new accuracy estimator .. In Chap. . we later give the coefficients for the feature functions, when trained on example alignments from benchmarks with known reference alignments.
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https://doi.org/10.1007/978-3-319-64918-4Bioinformatics; Biological sequence analysis; Multiple sequence alignment; Protein sequence alignment; A
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978-3-319-87902-4Springer International Publishing AG 2017
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Alignment Accuracy Estimationearning the coefficients of this estimator. Chapter . next describes gives details of the specific features that along with this framework make up the . accuracy estimator. Results on using the . estimator with the feature functions described in the next chapter are presented in Chap. ..
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