Titlebook: Mass Spectrometry of Proteins; Methods and Protocol Caroline A.‘Evans,Phillip C. Wright,Josselin Noire Book 2019 Springer Science+Business

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Quantitative Analysis of Protein ,-Acylation Site Dynamics Using Site-Specific Acyl-Biotin Exchange including membrane association, trafficking, and subcellular localization. Most proteomic methods to study palmitoylation allow characterization of putative palmitoylated proteins but do not permit identification of individual sites of palmitoylation. We have recently adapted the Acyl-Biotin Exchan

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Reducing Complexity? Cysteine Reduction and ,-Alkylation in Proteomic Workflows: Practical Consideraeps mitigate the limitations resulting from the presence of disulfide bridges. There has been recurring debate in the proteomics community around their use, with concern over negative impacts that result from overalkylation (off-target, non-thiol sites) or incomplete reduction and/or .-alkylation of

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Metaproteomics of Freshwater Microbial Communitiesities. Therefore, the large-scale identification of proteins expressed by environmental microbiomes allows?an unprecedented view of their in situ metabolism and function. However, one of the main challenges in metaproteomics remains the lack of robust analytical pipelines. This is especially true fo

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Peptide-to-Protein Summarization: An Important Step for Accurate Quantification in Label-Based Prote. Protein quantification requires a peptide-to-protein summarization step. This important step has been little investigated and most strategies only rely on quantitative spectrum values, ignoring a wealth of additional feature information is available for peptide spectra..In this chapter, we discuss

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