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Titlebook: Computational Methods in Systems Biology; 16th International C Milan ?e?ka,David ?afránek Conference proceedings 2018 Springer Nature Switz

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發(fā)表于 2025-3-23 12:26:52 | 只看該作者
Characterization of the Experimentally Observed Clustering of VEGF Receptors
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發(fā)表于 2025-3-23 14:04:34 | 只看該作者
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發(fā)表于 2025-3-23 18:44:04 | 只看該作者
14#
發(fā)表于 2025-3-23 22:43:39 | 只看該作者
https://doi.org/10.1007/978-1-4419-9120-1 implemented the encodings in a highly configurable tool and applied to a couple of found-in-nature VTSs and several synthetic graphs. Our results demonstrate that our method can scale up?to the graphs of interest.
15#
發(fā)表于 2025-3-24 04:48:24 | 只看該作者
https://doi.org/10.1007/978-1-4419-9120-1, we extend this approach to allow reasoning about the requirement for specific network motifs as a way of explaining how these behaviors arise. We illustrate the approach by analyzing the motifs involved in sign-sensitive delay and pulse generation. We demonstrate the scalability and biological rel
16#
發(fā)表于 2025-3-24 07:16:27 | 只看該作者
Denise Belchetz,Kenneth Leithwoodble than the second. Finally, we identify a special parametric regime, supporting a broad range of behaviour, in which the distribution can be analytically described in terms of the confluent hypergeometric limit function. We verify our analysis against large-scale kinetic Monte Carlo simulations. O
17#
發(fā)表于 2025-3-24 14:22:23 | 只看該作者
https://doi.org/10.1007/978-3-658-38276-6ems being experimented on, together with the discrete events representing the liquid-handling steps of biological protocols. We present both a deterministic and a stochastic semantics to this language, both defined in terms of hybrid processes. In particular, the stochastic semantics captures uncert
18#
發(fā)表于 2025-3-24 17:52:32 | 只看該作者
19#
發(fā)表于 2025-3-24 21:51:42 | 只看該作者
,How to Get Your Legislator’s Attention,rgy barriers. We apply this model to design catalytic systems with an arbitrarily large energy barrier to uncatalyzed reactions. Our results yield robust amplifiers using DNA strand displacement, a popular technology for engineering synthetic reaction pathways, and suggest design strategies for prev
20#
發(fā)表于 2025-3-25 03:05:25 | 只看該作者
https://doi.org/10.1007/978-1-349-06192-1iderata, permitting implementations that violate mass-action kinetics, or even “well-mixedness”, and allowing the systematic construction of complex computation via modular design. We show that to construct composable rate-independent CRNs, it is necessary and sufficient to ensure that the output sp
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