Titlebook: Comparative Genomics; Volume 1 Nicholas H. Bergman Book 2008 Humana Press 2008 Bur.DNA.Evolution.Promoter.RNA.conservation.genes.primary st

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PSI-BLAST Tutorialle sequence alignment of sequences detected above a given score threshold using protein–protein BLAST. This PSSM is used to further search the database for new matches, and is updated for subsequent iterations with these newly detected sequences. Thus, PSI-BLAST provides a means of detecting distant

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Organizing and Updating Whole Genome BLAST Searches with ReHABand useful to repeat similarity searches at frequent intervals, which then retrieve larger and larger sets of results. In addition, sequence similarity searches are now often performed with many sequences or even whole genomes. ReHAB (Recent Hits Acquired from Basic Local Alignment Search Tool [BLAS

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Mulanze functional coding and noncoding genomic elements. The tool Mulan (.) has been designed to effectively perform multiple comparisons of genomic sequences necessary to facilitate bioinformatic-driven biological discoveries. The Mulan network server is capable of comparing both closely and distantly

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