Titlebook: Algorithms in Bioinformatics; First International Olivier Gascuel,Bernard M. E. Moret Conference proceedings 2001 Springer-Verlag Berlin H

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Assessing the Statistical Significance of Overrepresented Oligonucleotides,problems how large deviation methodology applies. First, when some oligomer H occurs more often than expected, e.g. may be overrepresented, large deviations allow for a very efficient computation of the so-called . value. The second problem we address is the possible changes in the oligomers distrib

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Pattern Matching and Pattern Discovery Algorithms for Protein Topologies,educed to checking for subgraph isomorphism and finding maximal common subgraphs in a restricted class of ordered graphs. We have developed a subgraph isomorphism algorithm for ordered graphs, which performs well on the given set of data. The maximal common subgraph problem then is solved by repeate

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