Titlebook: Algorithms in Bioinformatics; Third International Gary Benson,Roderic D. M. Page Conference proceedings 2003 Springer-Verlag Berlin Heidel

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Consensus Networks: A Method for Visualising Incompatibilities in Collections of Treesorresponds to a bipartition or split of the set of taxa labelling its leaves. Given a collection of phylogenetic trees, each labelled by the same set of taxa, all those splits that appear in more than a predefined threshold proportion of the trees are displayed using a median network. The complexity

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Efficient Generation of Uniform Samples from Phylogenetic Treesically relevant constraints on the taxa. All the algorithms run in polynomial time and have been implemented..The algorithms have direct applications to the evaluation of phylogenetic tree and supertree construction methods using biologically curated data..We also relate one of the sampling problems

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New Efficient Algorithm for Detection of Horizontal Gene Transfer Eventsthe ways of possible HGT events which may have occurred during the evolution of a group of considered organisms. The proposed method proceeds by establishing differences between topologies of species and gene phylogenetic trees. Then, it uses a least-squares optimization procedure to test the possib

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A Linear-Time Majority Tree Algorithm of phylogenetic trees, which is usually a post-processing step in constructing a phylogeny. We are implementing the algorithm as part of an interactive visualization system for exploring distributions of trees, where speed is a serious concern for real-time interaction. The linear running time is a

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Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Modeltepwise, with phylogenetic reconstruction dependent on an initial multiple sequence alignment step. However these two steps are fundamentally interdependent. Whether the main interest is in sequence alignment or phylogeny, a major goal of computational biology is the co-estimation of both. Here we p

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Gary Benson,Roderic D. M. PageIncludes supplementary material:

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Lecture Notes in Computer Sciencehttp://image.papertrans.cn/a/image/153270.jpg

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Algorithms in Bioinformatics978-3-540-39763-2Series ISSN 0302-9743 Series E-ISSN 1611-3349