Titlebook: Algorithms in Bioinformatics; 12th International W Ben Raphael,Jijun Tang Conference proceedings 2012 Springer-Verlag Berlin Heidelberg 201

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FAZE

細(xì)查

Allgemeine physiologische Betrachtungen,triplets: For every .?≥?3, if . is an incompatible set of more than .???1 triplets over . labels, then some proper subset of . is incompatible. We show this bound is tight by exhibiting, for every .?≥?3, a set of .???1 triplets over . taxa such that . is incompatible, but every proper subset of . is

VEN

Reducing Problems in Unrooted Tree Compatibility to Restricted Triangulations of Intersection Graph continuing literature on graph triangulations, which has been exploited to create algorithms that are efficient in practice for a variety of Perfect-Phylogeny problems. Our reduction allows us to frame the compatibility problem as a minimal triangulation problem (in particular, as a chordal graph s

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BANAL

Improved Lower Bounds on the Compatibility of Quartets, Triplets, and Multi-state Characters,triplets: For every .?≥?3, if . is an incompatible set of more than .???1 triplets over . labels, then some proper subset of . is incompatible. We show this bound is tight by exhibiting, for every .?≥?3, a set of .???1 triplets over . taxa such that . is incompatible, but every proper subset of . is

為寵愛(ài)

Preserving Inversion Phylogeny Reconstruction,reconstruct the ancestral gene orders in phylogenies of several .-Proteobacteria species and Burkholderia strains, respectively. We prove in addition that the large parsimony problem (where the phylogeny is output) remains NP-complete.

Defiance

osteocytes

Space-Efficient and Exact de Bruijn Graph Representation Based on a Bloom Filter, Bloom filter, with an additional structure to remove critical false positives. An assembly software implementing this structure, Minia, performed a complete . assembly of human genome short reads using 5.7 GB of memory in 23 hours.

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Conference proceedings 2012ms and machine-learning methods that address important problems in molecular biology. The 35 full papers presented were carefully reviewed and selected from 92 submissions. The papers include algorithms for a variety of biological problems including phylogeny, DNA and RNA sequencing and analysis, protein structure, and others.