Titlebook: Algorithms for Computational Biology; Third International María Botón-Fernández,Carlos Martín-Vide,Miguel A. Conference proceedings 2016 S

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https://doi.org/10.1007/978-3-322-98420-3gorithms. However, these algorithms do not handle more than two RNAs. We note our recent successful formulation for the multiple (more than two) RNA interaction problem based on a combinatorial optimization called .. Even then, however, the optimal solution obtained does not necessarily correspond t

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https://doi.org/10.1007/978-3-322-99067-9ends an existing technique called STAR [.], which defines average coalescence rank between taxa pairs (couplets), to derive species trees using Neighbor-Joining (NJ) [., .]. Such coalescence rank, however, is ambiguous at couplet level. We propose two new couplet based distance measures, termed as .

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https://doi.org/10.1007/978-3-322-99067-9 and speciation events. While this approach can be used to annotate orthology and paralogy, we show how it can be used to verify reliability of tree reconciliation with applications to the problem of rooting of an unrooted gene tree. We propose a linear time algorithm for the computation of bootstra

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https://doi.org/10.1007/978-3-7091-7560-6. . is the problem of assigning each read to the correct chromosome in the set of chromosomes in a homologous group, with the aid of the reference sequence. In this paper, we extend an existing exact algorithm for haplotype assembly of diploid species (Patterson et al., 2014) to the ., polyploid cas

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Die Strassen von besonderer Artific gauge applied to DNA sequences that guarantees identification of the repeating substrings. The method allows the matching substrings to contain a given level of errors. The gauge is based on the development of a heavily sparse dictionary of repeats, thus drastically accelerating the search proc

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Algorithms for Computational Biology978-3-319-38827-4Series ISSN 0302-9743 Series E-ISSN 1611-3349

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Conference proceedings 2016in, in June 2016..The 13 full papers presented in this volume were carefully reviewed and.selected from 23 submissions. They are organized in the following topical sections: biological networks and modelling; biological structure processing; phylogenetics; and sequence analysis and rearrangement. In addition one invited talk is included..