Titlebook: Algorithms in Bioinformatics; 4th International Wo Inge Jonassen,Junhyong Kim Conference proceedings 2004 Springer-Verlag Berlin Heidelberg

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Reversing Gene Erosion – Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Datas of operations that transform one end point of the edge into the other) and in terms of genomes at internal nodes, on small, duplication-free genomes. Current gene-order methods break down, though, when the genomes contain more than a few hundred genes, possess high copy numbers of duplicated genes

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Reconstructing Ancestral Gene Orders Using Conserved Intervalsrrangements. Phylogenetic reconstruction based on such similarity measures raises many biological, formal and algorithmic questions, in particular the labelling of internal nodes with putative ancestral gene orders, and the selection of a good tree topology. In this paper, we investigate the propert

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Sorting by Reversals with Common Intervalsns. The computation of the minimal number of reversals between two signed permutations produced a lot of literature during the last decade. Algorithms designed were first approximative, then polynomial and were further improved to give a linear one. Several extensions were investigated authorizing f

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