標(biāo)題: Titlebook: RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods; Jan Gorodkin,Walter L. Ruzzo Book 2014 Springer Science+Bu [打印本頁(yè)] 作者: Taft 時(shí)間: 2025-3-21 16:36
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods影響因子(影響力)
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods影響因子(影響力)學(xué)科排名
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods網(wǎng)絡(luò)公開(kāi)度
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods網(wǎng)絡(luò)公開(kāi)度學(xué)科排名
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods被引頻次
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods被引頻次學(xué)科排名
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods年度引用
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods年度引用學(xué)科排名
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods讀者反饋
書(shū)目名稱(chēng)RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods讀者反饋學(xué)科排名
作者: NUL 時(shí)間: 2025-3-21 23:37 作者: 最初 時(shí)間: 2025-3-22 01:48
Energy-Based RNA Consensus Secondary Structure Prediction in Multiple Sequence Alignments,gorithms. Here we describe the theory and applications of the RNAalifold algorithm. Consensus secondary structure prediction not only leads to significantly more accurate structure models, but it also allows to study structural conservation of functional RNAs.作者: Gnrh670 時(shí)間: 2025-3-22 05:43
, Discovery of Structured ncRNA Motifs in Genomic Sequences,ch based on the CMfinder program as a case study. Applications to genomic screens for novel . structured ncRNAs, including structured RNA elements in untranslated portions of protein-coding genes, are presented.作者: 無(wú)意 時(shí)間: 2025-3-22 09:27 作者: 腐蝕 時(shí)間: 2025-3-22 14:48
Energy-Directed RNA Structure Prediction, in thermodynamic equilibrium. However, especially for long RNAs, this need not be the case. In the last section we therefore discuss approaches for predicting RNA folding kinetics and co-transcriptional folding.作者: 禮節(jié) 時(shí)間: 2025-3-22 18:39
Automated Modeling of RNA 3D Structure,he ParAlign and Infernal programs on RNA family data from Rfam. We also briefly summarize template-free methods for RNA 3D structure prediction. Typically, RNA structures generated by automated modeling methods require local or global optimization. Thus, we also discuss methods that can be used for local or global refinement of RNA structures.作者: 巡回 時(shí)間: 2025-3-23 00:16
Concepts and Introduction to RNA Bioinformatics,ods for interactions between RNA and proteins..Here, we introduce the basic concepts of predicting RNA secondary structure relevant to the further analyses of RNA sequences. We also provide pointers to methods addressing various aspects of RNA bioinformatics and computational RNA biology.作者: commute 時(shí)間: 2025-3-23 01:25
Annotating Functional RNAs in Genomes Using Infernal,he Rfam database are used to identify RNAs in the genome of the archaeon ., uncovering some additional RNAs not present in the genome’s initial annotation. Analysis of the results and comparison with family-specific methods demonstrate some important strengths and weaknesses of this general approach.作者: 警告 時(shí)間: 2025-3-23 08:11 作者: 笨重 時(shí)間: 2025-3-23 12:49 作者: 催眠藥 時(shí)間: 2025-3-23 14:35 作者: Diatribe 時(shí)間: 2025-3-23 18:54
1064-3745 n advice from the experts.Includes supplementary material: .The existence of genes for RNA molecules not coding for proteins (ncRNAs) has been recognized since the 1950‘s, but until recently, aside from the critically important ribosomal and transfer RNA genes, most focus has been on protein coding 作者: artless 時(shí)間: 2025-3-23 23:58
Concepts and Introduction to RNA Bioinformatics,e field has evolved to exploit multiple sequences to take evolutionary information into account, such as compensating (and structure preserving) base changes. These methods have been developed further and applied for computational screens of genomic sequence. Furthermore, a number of additional dire作者: 表示向前 時(shí)間: 2025-3-24 05:57
The Principles of RNA Structure Architecture, in biotechnology as drug and sensor. Here we describe the composition and fundamental properties of RNA and how the single-stranded RNA chains fold and shape certain motifs that are repeatedly observed in different structures. Small and large molecular mass RNA binders are being touched upon, as is作者: 牛的細(xì)微差別 時(shí)間: 2025-3-24 09:31 作者: 侵略者 時(shí)間: 2025-3-24 11:55
Energy-Directed RNA Structure Prediction,is approach that allow to compute suboptimal foldings, or even the partition function over all possible secondary structures. The latter are essential in order to deal with the inaccuracy of minimum free energy (MFE) structure prediction, and can be used, for example, to derive reliability measures 作者: animated 時(shí)間: 2025-3-24 17:17 作者: 無(wú)能的人 時(shí)間: 2025-3-24 22:25
An Introduction to RNA Databases,ta collection and curation and discuss their impact on both the scope and accuracy of the resulting databases. Finally, we demonstrate these principles through detailed examination of four leading RNA databases: Noncode, miRBase, Rfam, and SILVA.作者: Initial 時(shí)間: 2025-3-25 00:03 作者: Figate 時(shí)間: 2025-3-25 05:59
SCFGs in RNA Secondary Structure Prediction : A Hands-on Approach,in RNA secondary structure prediction. In this chapter, we discuss the basic SCFG algorithms (CYK and inside–outside algorithms) in an application-centered manner and use the pfold grammar as a case study to show how the algorithms can be adapted to a grammar in a nonstandard form. We extend our dis作者: 北極熊 時(shí)間: 2025-3-25 08:16
Annotating Functional RNAs in Genomes Using Infernal,e not routinely annotated in published genomes. Several programs have been developed for identifying RNAs, including specific tools tailored to a particular RNA family as well as more general ones designed to work for any family. Many of these tools utilize covariance models (CMs), statistical model作者: Cougar 時(shí)間: 2025-3-25 13:30
Class-Specific Prediction of ncRNAs, sequence motifs and/or common secondary structure features. The detection of new members of RNA classes, as well as the comprehensive annotation of genomes with members of RNA classes is a challenging task that goes beyond simple homology search. Computational methods addressing this problem typica作者: 并入 時(shí)間: 2025-3-25 16:06
Abstract Shape Analysis of RNA,shapes classify competing secondary structures into classes that are defined by their arrangement of helices. It allows us to compute, in addition to the structure of minimal free energy, a set of structures that represents relevant and interesting structural alternatives. Furthermore, it allows to 作者: 無(wú)能的人 時(shí)間: 2025-3-25 23:30
Introduction to RNA Secondary Structure Comparison,ucture representations and discuss their suitability for structure comparison. Then, we take a look at the more commonly used methods, restricting ourselves to structures without pseudo-knots. For comparing structures of the same sequence, we study base pair distances. For structures of different se作者: extrovert 時(shí)間: 2025-3-26 03:47
RNA Structural Alignments, Part I: Sankoff-Based Approaches for Structural Alignments,for structural alignment is based on the principles proposed by Sankoff more than 25 years ago. The Sankoff algorithm simultaneously folds and aligns two or more sequences. The advantage of this algorithm over those that separate the folding and alignment steps is that it makes better predictions. T作者: 受傷 時(shí)間: 2025-3-26 07:22
RNA Structural Alignments, Part II: Non-Sankoff Approaches for Structural Alignments,ry structure and the score of the alignment, is too high for long sequences (.(..) time for two sequences of length .). In this chapter, we introduce the methods that predict the structures and the alignment separately to avoid the heavy computations in Sankoff algorithm. In those methods, neither o作者: 葡萄糖 時(shí)間: 2025-3-26 08:52
, Discovery of Structured ncRNA Motifs in Genomic Sequences,ogy. This chapter outlines the challenges presented by this problem, together with some approaches towards solving them, with an emphasis on an approach based on the CMfinder program as a case study. Applications to genomic screens for novel . structured ncRNAs, including structured RNA elements in 作者: 罐里有戒指 時(shí)間: 2025-3-26 15:43 作者: CRAFT 時(shí)間: 2025-3-26 20:09 作者: vibrant 時(shí)間: 2025-3-26 21:14 作者: BLAND 時(shí)間: 2025-3-27 04:20
,Computational Prediction of RNA–RNA Interactions,s, namely the stability of the duplex between the two interacting RNAs and the internal structure of both mRNA and ncRNA. Thus, approaches can be distinguished into different major categories depending on how they consider inter- and intramolecular structure. The first class completely neglects the 作者: overrule 時(shí)間: 2025-3-27 06:50
SCFGs in RNA Secondary Structure Prediction : A Hands-on Approach,cussion to the use of grammars with additional information (such as evolutionary information) to improve the quality of predictions. Finally, we provide a brief survey of programs that use stochastic context-free grammars for RNA secondary structure prediction and modelling.作者: 財(cái)政 時(shí)間: 2025-3-27 11:42
Introduction to RNA Secondary Structure Comparison,quences (and of different length), we study variants of the tree edit model. We name some of the available tools and give pointers to the literature. We end with a short review on comparing structures with pseudo-knots as an unsolved problem and topic of active research.作者: 遺忘 時(shí)間: 2025-3-27 14:50
The Art of Editing RNA Structural Alignments,rations that go into constructing RNA structural alignments at the secondary and tertiary structure level; introduce software, databases, and algorithms that have proven useful in semiautomating the work process; and suggest future directions towards full automatization.作者: colony 時(shí)間: 2025-3-27 20:45
Mirela Andronescu,Anne Condon,Douglas H. Turner,David H. Mathews作者: Mechanics 時(shí)間: 2025-3-27 22:29
Stefan Washietl,Stephan H. Bernhart,Manolis Kellis作者: Fibrinogen 時(shí)間: 2025-3-28 02:26
Kristian Rother,Magdalena Rother,Pawel Skiba,Janusz M. Bujnicki作者: 財(cái)產(chǎn) 時(shí)間: 2025-3-28 07:30
RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods作者: separate 時(shí)間: 2025-3-28 13:26 作者: 迷住 時(shí)間: 2025-3-28 18:28
RNA Structural Alignments, Part I: Sankoff-Based Approaches for Structural Alignments, the methods based on the Sankoff algorithm. All the practical implementations of the algorithm use heuristics to make them run in reasonable time and memory. These heuristics are also described in this chapter.作者: 他很靈活 時(shí)間: 2025-3-28 21:25 作者: 我怕被刺穿 時(shí)間: 2025-3-29 03:00 作者: 知道 時(shí)間: 2025-3-29 06:56 作者: aqueduct 時(shí)間: 2025-3-29 08:02
Book 2014eld describe a substantial and relevant fraction of these methodologies from both practical and computational/algorithmic perspectives. Focusing on both of these directions addresses both the biologist interested in knowing more about RNA bioinformatics as well as the bioinformaticist interested in 作者: V切開(kāi) 時(shí)間: 2025-3-29 15:01
ality and electron transfer through chiral systems; by Spiros Skourtis and David Beratan .*.Chiral-selective surface chemistry induced by spin-polarized secondary electrons; by Richard Rosenberg.978-3-642-26698-0978-3-642-18104-7Series ISSN 0340-1022 Series E-ISSN 1436-5049 作者: 瘙癢 時(shí)間: 2025-3-29 16:45 作者: 暖昧關(guān)系 時(shí)間: 2025-3-29 23:38
978-1-4939-6165-8Springer Science+Business Media New York 2014作者: 安裝 時(shí)間: 2025-3-30 02:28
RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods978-1-62703-709-9Series ISSN 1064-3745 Series E-ISSN 1940-6029 作者: BACLE 時(shí)間: 2025-3-30 05:27
Jan Gorodkin,Walter L. RuzzoPresents current up-to-date methodologies.Features tips on trouble shooting and avoiding known pitfalls.Contains key notes and implementation advice from the experts.Includes supplementary material: 作者: 有特色 時(shí)間: 2025-3-30 08:59 作者: 笨重 時(shí)間: 2025-3-30 14:54 作者: NIP 時(shí)間: 2025-3-30 20:26 作者: Influx 時(shí)間: 2025-3-30 23:30
Understanding the Promise of Communication for Social Change: Challenges in Transforming India Towa rights for sustainable development. There is marginalization and near exclusion of women’s reality in development policy debates and media discourse. Alternative communication media and the digital media are being widely used for giving voice to the marginalized and rural communities. Women are als作者: 寬宏大量 時(shí)間: 2025-3-31 03:32
?tiopathogenetische Konzepte und Krankheitsmodelle in der Psychiatrieussage beruht auf der klinischen Alltagserfahrung, dass psychische Krankheit in ihren Auswirkungen auf die betroffene Person beobachtet werden kann und daher nicht nur eine durch konstruktivistische Grundannahmen herbeigeführte Scheinrealit?t darstellt (Diskussion hierzu bei Philips et al. 2012). In作者: Implicit 時(shí)間: 2025-3-31 07:35
Efficient Personalized Influential Community Search in Large NetworksIn the recent, plenty of research is conducted to detect influential communities, where each vertex in the network is associated with an influence value. Nevertheless, there is a paucity of work that can support personalized requirement. In this paper, we propose a new problem, i.e., maximal persona作者: 偶像 時(shí)間: 2025-3-31 09:45 作者: 擴(kuò)音器 時(shí)間: 2025-3-31 15:26
Connecting Company Strategy and Network Identityis thus to conceptualize how strategic relations are managed in accordance with the overall corporate strategy. Thus it tries to answer: Are there important connections between a firm’s network strategy and its corporate strategy?作者: crease 時(shí)間: 2025-3-31 21:26
An Australian Story,illing job. Although from different countries and states in America, I think there are many similarities with all the women in this book, both from a personal level of the time we have lived in and the careers we have chosen.作者: Substitution 時(shí)間: 2025-3-31 23:28 作者: Tailor 時(shí)間: 2025-4-1 02:54
It then goes on to detail the internal representations and local functions of larger wholes in smaller communities, shedding a new light on issues of inter- disciplinary interest: self- governance, participation, local knowledge, social memory, scale, planning and development..Of interest to politi作者: Basilar-Artery 時(shí)間: 2025-4-1 09:08 作者: omnibus 時(shí)間: 2025-4-1 12:36
in Ghanbari – Kirsten Heike Giering – Saskia Stella Gleitsmann – Laura Gro?e – Laura Halfas – Ilka Hartmann – Caitlin Hennen – Josephine Henning – Verena Herb – Ulrike Hiller – Nicole H?lscher – Elke Holst – Be978-3-658-37904-9978-3-658-37905-6作者: 諂媚于性 時(shí)間: 2025-4-1 17:55
Unternehmenskooperation und Netzwerkmanagementhttp://image.papertrans.cn/i/image/472346.jpg作者: COWER 時(shí)間: 2025-4-1 19:54 作者: 半球 時(shí)間: 2025-4-1 23:26
