標(biāo)題: Titlebook: Gene Prediction; Methods and Protocol Martin Kollmar Book 2019 Springer Science+Business Media, LLC, part of Springer Nature 2019 mGene.Com [打印本頁] 作者: 太平間 時(shí)間: 2025-3-21 16:29
書目名稱Gene Prediction影響因子(影響力)
書目名稱Gene Prediction影響因子(影響力)學(xué)科排名
書目名稱Gene Prediction網(wǎng)絡(luò)公開度
書目名稱Gene Prediction網(wǎng)絡(luò)公開度學(xué)科排名
書目名稱Gene Prediction被引頻次
書目名稱Gene Prediction被引頻次學(xué)科排名
書目名稱Gene Prediction年度引用
書目名稱Gene Prediction年度引用學(xué)科排名
書目名稱Gene Prediction讀者反饋
書目名稱Gene Prediction讀者反饋學(xué)科排名
作者: 愛哭 時(shí)間: 2025-3-21 23:47 作者: 扔掉掐死你 時(shí)間: 2025-3-22 04:10
Structural and Functional Annotation of Eukaryotic Genomes with GenSAS,SAS users enabling collaborative annotation. Once annotation is complete, GenSAS generates the final files of the annotated gene models in common file formats for use with other annotation tools, submission to a repository, and use in publications.作者: 不透明性 時(shí)間: 2025-3-22 05:52
EuGene: An Automated Integrative Gene Finder for Eukaryotes and Prokaryotes,rediction, EuGene can be considered as purely ab initio, purely similarity based, or hybrid. With the general availability of NGS-transcribed sequence data in genome projects, EuGene adopts a default hybrid behavior that strongly relies on similarity information. Initially targeted at eukaryotic gen作者: 記憶 時(shí)間: 2025-3-22 10:13
Choosing the Best Gene Predictions with GeneValidator,be regenerated from a filtered subset of GeneValidator’s JSON output. Subsequently, we demonstrate how GeneValidator’s GUI can be used to complement manual curation efforts. Additionally, we explain how GeneValidator can be used to merge information from multiple annotations by automatically selecti作者: Abrade 時(shí)間: 2025-3-22 13:24 作者: Abrade 時(shí)間: 2025-3-22 19:26 作者: ABYSS 時(shí)間: 2025-3-22 22:56 作者: Lumbar-Spine 時(shí)間: 2025-3-23 05:12 作者: 裙帶關(guān)系 時(shí)間: 2025-3-23 06:10
ChemGenome2.1: An Ab Initio Gene Prediction Software,作者: Basilar-Artery 時(shí)間: 2025-3-23 10:30
Correction to: Choosing the Best Gene Predictions with GeneValidator,作者: 羽毛長成 時(shí)間: 2025-3-23 14:13
Understanding and Negotiating an Agreement,cting tRNA genes in whole genomes. The newly developed version 2.0 has incorporated advanced methodologies with improved probabilistic search software and a suite of new gene models, enabling better functional classification of predicted genes. This chapter describes the use of the UNIX command-driv作者: 中止 時(shí)間: 2025-3-23 19:25
https://doi.org/10.1057/9780230375758ped into several different RNA families, which can be represented by conserved primary sequences, secondary structures, or covariance models (CMs). CMs are very sensitive in predicting RNA families in nucleotide sequences and have been widely used in characterizing the repertoire of ncRNAs in organi作者: Ornament 時(shí)間: 2025-3-24 00:57
https://doi.org/10.1007/978-3-030-65185-5as manual curation. Requiring no installation by users, GenSAS integrates popular command line-based, annotation tools under a single, easy-to-use, online interface. GenSAS integrates JBrowse and Apollo, so users can view annotation data and manually curate gene models. Users are guided step by step作者: 拖債 時(shí)間: 2025-3-24 02:56 作者: 磨碎 時(shí)間: 2025-3-24 08:28 作者: 輕浮女 時(shí)間: 2025-3-24 13:29
https://doi.org/10.1007/3-211-37869-3enomic DNA sequences representing a complete genome, EuGene is able to predict the major transcript units in the genome from a variety of sources of information: statistical information, similarities with known transcripts and proteins, but also any GFF3 structured information supporting the presenc作者: 癡呆 時(shí)間: 2025-3-24 16:53 作者: rheumatology 時(shí)間: 2025-3-24 21:45 作者: Deference 時(shí)間: 2025-3-24 23:51
Towards a Practical Cosmopolitanism,d genomes. CESAR is an approach that makes use of existing genome alignments to transfer genes from one genome to other aligned genomes, and thus generates comparative gene annotations. To accurately detect conserved exons that exhibit an intact reading frame and consensus splice sites, CESAR produc作者: Fibrinogen 時(shí)間: 2025-3-25 03:20 作者: 破譯 時(shí)間: 2025-3-25 08:42
Embodied Critical Inquiry: A Method,d gene prediction algorithms. DNA sequences with small protein-coding genes or exons, complex intron-containing genes, or degenerated DNA fragments are efficiently targeted by AnABlast. Furthermore, this algorithm is particularly useful in detecting protein-coding sequences with nonsignificant homol作者: 骨 時(shí)間: 2025-3-25 14:48
The Pathology of Trophoblastic Tumours,uence database. It is available both as a web service and as a stand-alone tool that runs on local machines. DFAST can annotate a typical-sized bacterial genome within 5?min. The default annotation workflow contains a gene prediction phase for protein coding sequence, rRNA, tRNA, and CRISPR, and a f作者: 愚蠢人 時(shí)間: 2025-3-25 17:11 作者: 厭惡 時(shí)間: 2025-3-25 23:34
https://doi.org/10.1007/978-1-4684-1062-4ter settings give rise to variable outputs, which leaves a decision of which output to adopt for downstream analysis for addressing biological questions. Instead of superficial assessment of length-based statistics of output sequences (e.g., N50 scaffold length), completeness assessment by means of 作者: jealousy 時(shí)間: 2025-3-26 01:14
Sumit Randhir Singh,Jay Chhablaninces in public databases. For this, it runs up to seven comparisons per gene. Results are shown in an HTML report containing summary statistics and graphical visualizations that aim to be useful for curators. Results are also presented in CSV and JSON formats for automated follow-up analysis..Here, 作者: 咽下 時(shí)間: 2025-3-26 07:09 作者: 諷刺滑稽戲劇 時(shí)間: 2025-3-26 10:36 作者: 精密 時(shí)間: 2025-3-26 15:20 作者: 態(tài)度暖昧 時(shí)間: 2025-3-26 19:03
Springer Science+Business Media, LLC, part of Springer Nature 2019作者: Altitude 時(shí)間: 2025-3-26 21:27 作者: Onerous 時(shí)間: 2025-3-27 03:57
https://doi.org/10.1007/978-3-642-15772-1cting model database, filtration of predicted gene models, and post-process such as checking genome completeness and transposable elements. Using FunGAP, the user will acquire a high-quality fungal gene prediction for post-genome sequencing analysis.作者: 截?cái)?nbsp; 時(shí)間: 2025-3-27 08:11 作者: Subdue 時(shí)間: 2025-3-27 10:42
Towards a Practical Cosmopolitanism,ESAR is able to detect most evolutionary splice site shifts, which helps to annotate exon boundaries at high precision. Here, we describe how to apply CESAR to generate comparative gene annotations for one or many species, and discuss the strengths and limitations of this approach. CESAR is available at ..作者: 懶鬼才會(huì)衰弱 時(shí)間: 2025-3-27 13:50
Practical Guide for Fungal Gene Prediction from Genome Assembly and RNA-Seq Reads by FunGAP,cting model database, filtration of predicted gene models, and post-process such as checking genome completeness and transposable elements. Using FunGAP, the user will acquire a high-quality fungal gene prediction for post-genome sequencing analysis.作者: addition 時(shí)間: 2025-3-27 18:25 作者: 解決 時(shí)間: 2025-3-27 23:45
Coding Exon-Structure Aware Realigner (CESAR): Utilizing Genome Alignments for Comparative Gene AnnESAR is able to detect most evolutionary splice site shifts, which helps to annotate exon boundaries at high precision. Here, we describe how to apply CESAR to generate comparative gene annotations for one or many species, and discuss the strengths and limitations of this approach. CESAR is available at ..作者: PARA 時(shí)間: 2025-3-28 05:32
1064-3745 ation advice from the expertsThis volume introduces software used for gene prediction with focus on eukaryotic genomes. The chapters in this book describe software and web server usage as applied in common use-cases, and explain ways to simplify re-annotation of long available genome assemblies. Wri作者: incubus 時(shí)間: 2025-3-28 08:29 作者: 業(yè)余愛好者 時(shí)間: 2025-3-28 13:46
Embodied Critical Inquiry: A Method,e efficiently targeted by AnABlast. Furthermore, this algorithm is particularly useful in detecting protein-coding sequences with nonsignificant homologs to sequences in databases. AnABlast can be executed online at ..作者: 煩擾 時(shí)間: 2025-3-28 15:25 作者: 人工制品 時(shí)間: 2025-3-28 22:49
AnABlast: Re-searching for Protein-Coding Sequences in Genomic Regions,e efficiently targeted by AnABlast. Furthermore, this algorithm is particularly useful in detecting protein-coding sequences with nonsignificant homologs to sequences in databases. AnABlast can be executed online at ..作者: hazard 時(shí)間: 2025-3-29 01:04 作者: 自然環(huán)境 時(shí)間: 2025-3-29 06:58 作者: cartilage 時(shí)間: 2025-3-29 08:47 作者: 吞噬 時(shí)間: 2025-3-29 14:31
Choreography and Verbatim Theatre exons not only in introns but also in up- and downstream regions in case of incompleteness of the search sequence. In this chapter, I describe how to use Scipio and WebScipio keeping a first-time user in mind.作者: Canopy 時(shí)間: 2025-3-29 17:38
https://doi.org/10.1007/978-1-4684-1062-4te report scores based on not just the coverage of reference genes but also on sequence lengths, allowing quality control in multiple aspects. This chapter focuses on the procedure for such assessment and provides technical tips for higher accuracy.作者: 中止 時(shí)間: 2025-3-29 22:51
Whole-Genome Annotation with BRAKER,en extended to the integration of data on mapped cross-species proteins, and to the usage of heterogeneous extrinsic evidence, both RNA-Seq and protein alignments. In this book chapter, we briefly summarize the pipeline methodology and describe how to apply BRAKER in environments characterized by various combinations of external evidence.作者: 態(tài)度暖昧 時(shí)間: 2025-3-30 03:32 作者: 不可救藥 時(shí)間: 2025-3-30 04:52
Evaluating Genome Assemblies and Gene Models Using gVolante,te report scores based on not just the coverage of reference genes but also on sequence lengths, allowing quality control in multiple aspects. This chapter focuses on the procedure for such assessment and provides technical tips for higher accuracy.作者: Glucose 時(shí)間: 2025-3-30 09:46
https://doi.org/10.1007/978-3-030-79446-0ifferent reference species to a target species. Here, we present a detailed description of GeMoMa modules and the GeMoMa pipeline and how they can be used on the command line to address particular biological problems.作者: 有幫助 時(shí)間: 2025-3-30 15:34
The Pathology of Trophoblastic Tumours,unctional annotation phase to infer protein functions. DFAST generates result files in standard annotation formats and data files for submission to DNA Data Bank of Japan (DDBJ). In this chapter, the annotation workflow and applications of DFAST are introduced.作者: 彎腰 時(shí)間: 2025-3-30 16:35 作者: dainty 時(shí)間: 2025-3-30 21:44 作者: Bmd955 時(shí)間: 2025-3-31 01:39
GeMoMa: Homology-Based Gene Prediction Utilizing Intron Position Conservation and RNA-seq Data,ifferent reference species to a target species. Here, we present a detailed description of GeMoMa modules and the GeMoMa pipeline and how they can be used on the command line to address particular biological problems.作者: Indigence 時(shí)間: 2025-3-31 08:08
Generating Publication-Ready Prokaryotic Genome Annotations with DFAST,unctional annotation phase to infer protein functions. DFAST generates result files in standard annotation formats and data files for submission to DNA Data Bank of Japan (DDBJ). In this chapter, the annotation workflow and applications of DFAST are introduced.作者: 橢圓 時(shí)間: 2025-3-31 09:11 作者: 減去 時(shí)間: 2025-3-31 14:09 作者: 盡忠 時(shí)間: 2025-3-31 20:44
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences,cting tRNA genes in whole genomes. The newly developed version 2.0 has incorporated advanced methodologies with improved probabilistic search software and a suite of new gene models, enabling better functional classification of predicted genes. This chapter describes the use of the UNIX command-driv作者: 巫婆 時(shí)間: 2025-4-1 00:59 作者: 鞭子 時(shí)間: 2025-4-1 02:59
Structural and Functional Annotation of Eukaryotic Genomes with GenSAS,as manual curation. Requiring no installation by users, GenSAS integrates popular command line-based, annotation tools under a single, easy-to-use, online interface. GenSAS integrates JBrowse and Apollo, so users can view annotation data and manually curate gene models. Users are guided step by step
