作者: angina-pectoris 時間: 2025-3-21 22:15
Using ZFIN: Data Types, Organization, and Retrieval, ZFIN are accessible via web pages, download files, and the ZebrafishMine (zebrafishmine.org), an installation of the InterMine data warehousing software. Searching for data at ZFIN utilizes both parameterized search forms and a single box search for searching or browsing data quickly. This chapter 作者: tympanometry 時間: 2025-3-22 00:27
EchinoBase: Tools for Echinoderm Genome Analyses,asets and analyses they permit provide the basic components required for developing an understanding of how echinoderm genomes are regulated, especially during early development, and provides a platform for comparative genomic inquiries among species in this phylum.作者: stratum-corneum 時間: 2025-3-22 07:15
Using FlyBase to Find Functionally Related , Genes,blished gene sets. This chapter describes protocols to produce lists of functionally related genes in FlyBase using GO annotations, protein domain data and the Gene Groups resource, and provides guidance and advice for their further analysis and processing.作者: CEDE 時間: 2025-3-22 09:42 作者: recession 時間: 2025-3-22 13:52 作者: recession 時間: 2025-3-22 19:29 作者: 小隔間 時間: 2025-3-23 00:23
Uwe Wagschal,Florian Ruf,Eva Krummenauer ZFIN are accessible via web pages, download files, and the ZebrafishMine (zebrafishmine.org), an installation of the InterMine data warehousing software. Searching for data at ZFIN utilizes both parameterized search forms and a single box search for searching or browsing data quickly. This chapter 作者: Hallmark 時間: 2025-3-23 03:49
https://doi.org/10.1007/978-3-031-22713-4asets and analyses they permit provide the basic components required for developing an understanding of how echinoderm genomes are regulated, especially during early development, and provides a platform for comparative genomic inquiries among species in this phylum.作者: 六邊形 時間: 2025-3-23 06:29 作者: Hemoptysis 時間: 2025-3-23 15:25
1064-3745 wser: Strategies for Accessing Eukaryotic Genome Data‘ are available open access under a CC BY 4.0 license via link.springer.com..978-1-4939-9270-6978-1-4939-7737-6Series ISSN 1064-3745 Series E-ISSN 1940-6029 作者: Senescent 時間: 2025-3-23 20:38 作者: Largess 時間: 2025-3-24 00:30
,An Introduction to the?Saccharomyces Genome Database (SGD),ic sequence of this highly studied organism, SGD provides integrated data regarding gene functions and phenotypes, which are extracted from the published literature. The vast amount and variety of data housed in the database can prove challenging to navigate for the first-time user. Therefore, this 作者: Exaggerate 時間: 2025-3-24 05:55 作者: Medley 時間: 2025-3-24 09:03 作者: 削減 時間: 2025-3-24 11:18 作者: Grasping 時間: 2025-3-24 17:35 作者: Intend 時間: 2025-3-24 20:56 作者: dominant 時間: 2025-3-24 23:49
,A Primer for the?Rat Genome Database (RGD),disease. The Rat Genome Database (RGD, .) is a model organism database that provides access to a wide variety of curated rat data including disease associations, phenotypes, pathways, molecular functions, biological processes and cellular components for genes, quantitative trait loci, and strains. W作者: Trypsin 時間: 2025-3-25 03:55
Bovine Genome Database: Tools for Mining the , Genome, tools. BovineMine is a tool within BGD that integrates BGD data, including the genome, genes, precomputed gene expression levels and variant consequences, with external data sources that include quantitative trait loci (QTL), orthologues, Gene Ontology, gene interactions, and pathways. BovineMine e作者: 倫理學(xué) 時間: 2025-3-25 08:45
Navigating Xenbase: An Integrated , Genomics and Gene Expression Database,ts a variety of content including current and archived genomes for both . and ., bioinformatic tools for comparative genetic analyses including BLAST and GBrowse, annotated . literature, and catalogs of reagents including antibodies, ORFeome clones, morpholinos, and transgenic lines. Xenbase compile作者: 擔(dān)心 時間: 2025-3-25 13:51
Using ZFIN: Data Types, Organization, and Retrieval,community. Some of the earliest records in ZFIN were for people and laboratories. Since that time, services and data types provided by ZFIN have grown considerably. Today, ZFIN provides the official nomenclature for zebrafish genes, mutants, and transgenics and curates many data types including gene作者: 易發(fā)怒 時間: 2025-3-25 15:56
EchinoBase: Tools for Echinoderm Genome Analyses,hinoBase (.) is an echinoderm-specific genome database and web information system that provides a platform for the interrogation and exploration of echinoderm genomic data. This chapter outlines the datasets available on EchinoBase; from assembled genomes and genome annotations, to spatial and quant作者: Essential 時間: 2025-3-25 21:51
A Multi-Omics Database for Parasitic Nematodes and Trematodes,has evolved to become the moniker for a collection of databases: . and .. These databases host information for 73 nematode (roundworms) and 17 trematode (flatworms) species and serve as backbone for a number of tools that allow users to query slices of the data for multifactorial combinations of spe作者: MUTE 時間: 2025-3-26 03:45
Using WormBase: A Genome Biology Resource for , and Related Nematodes,matode genome sequences are becoming available and as richer data sets are published, WormBase strives to maintain updated information, displays, and services to facilitate efficient access to and understanding of the knowledge generated by the published nematode genetics literature. This chapter ai作者: separate 時間: 2025-3-26 07:27
Using WormBase ParaSite: An Integrated Platform for Exploring Helminth Genomic Data, for over 100 helminth species, adding value by way of consistent functional annotation, gene comparative analysis and gene expression analysis. We provide several ways of exploring the data including a choice of genome browsers, genome and gene summary pages, text and sequence searching, a query wi作者: 全等 時間: 2025-3-26 12:19
Using FlyBase to Find Functionally Related , Genes,Traditionally, FlyBase data have been organized and presented at a gene-by-gene level, which remains a useful perspective when the object of interest is a specific gene or gene product. However, in the modern era of a fully sequenced genome and an increasingly characterized proteome, it is often des作者: 難解 時間: 2025-3-26 12:44
Hymenoptera Genome Database: Using HymenopteraMine to Enhance Genomic Studies of Hymenopteran InsecGD provides genome browsers with manual annotation tools (JBrowse/Apollo), BLAST, bulk data download, and a data mining warehouse (HymenopteraMine). This chapter focuses on the use of HymenopteraMine to create annotation data sets that can be exported for use in downstream analyses. HymenopteraMine 作者: restrain 時間: 2025-3-26 19:16
Navigating the i5k Workspace@NAL: A Resource for Arthropod Genomes, and counting, the i5k Workspace strives to facilitate public data access, visualization, and community curation across arthropod species. Any researcher with an arthropod genome project who would like to take advantage of the i5k Workspace facilities is encouraged to submit their data. In this chap作者: 割公牛膨脹 時間: 2025-3-26 22:57 作者: FOIL 時間: 2025-3-27 01:51 作者: FILLY 時間: 2025-3-27 06:22 作者: dainty 時間: 2025-3-27 12:05
Bovine Genome Database: Tools for Mining the , Genome,nables researchers without programming skills to create custom integrated datasets for use in downstream analyses. This chapter describes how to enhance a bovine genomics project using the Bovine Genome Database, with data mining examples demonstrating BovineMine.作者: 情感脆弱 時間: 2025-3-27 14:46
A Multi-Omics Database for Parasitic Nematodes and Trematodes,cies-omics properties. Recent focus has been on inclusion of gene and protein expression data, population genomics and cross-kingdom interactions (metagenomics datasets). This chapter describes the website, the available tools and some of the new features.作者: Ventricle 時間: 2025-3-27 19:19 作者: Yag-Capsulotomy 時間: 2025-3-28 00:25
https://doi.org/10.1007/978-3-030-84226-0 a graphical interface that does not require prior computational skills. This chapter describes guiding concepts common across EuPathDB sites and illustrates the powerful data mining capabilities of some of the available tools and features.作者: 惡臭 時間: 2025-3-28 04:18
Daniel C. O’Connell,Sabine KowalGene Ontologies (GO). This chapter introduces you to Gene and Allele Detail pages and provides step-by-step instructions for simple searches and those that take advantage of the breadth of MGI data integration.作者: 雄偉 時間: 2025-3-28 06:21 作者: 水汽 時間: 2025-3-28 12:42
,Mouse Genome Informatics (MGI) Is the International Resource for Information on the?Laboratory MousGene Ontologies (GO). This chapter introduces you to Gene and Allele Detail pages and provides step-by-step instructions for simple searches and those that take advantage of the breadth of MGI data integration.作者: gratify 時間: 2025-3-28 17:28
1064-3745 ation advice from the experts.This volume explores databases containing genome-based data and genome-wide analyses. This book covers databases from all eukaryotic taxa, except plants. The chapters describe database contents and classic use-cases, which assist in accessing eukaryotic genomic data and作者: 熒光 時間: 2025-3-28 19:21
Befunde aus der Praxis der Arbeitsforschung, find the most closely related species to the own organism of interest in particular. The exponentially increasing number of sequenced species demands sophisticated search and data presentation tools. In this chapter we describe how to navigate the diArk database keeping a first-time user in mind.作者: 合乎習(xí)俗 時間: 2025-3-29 01:23 作者: adhesive 時間: 2025-3-29 04:40
https://doi.org/10.1007/978-3-031-31000-3nes, and a promoter and the epigenetic marks and protein-binding activity associated with it. These workflows illustrate a subset of the data types available through the Ensembl Browser, and can be considered a springboard for further exploration.作者: malapropism 時間: 2025-3-29 10:44
https://doi.org/10.1007/978-3-030-26702-5sociations, phenotypes, pathways, molecular functions, biological processes and cellular components for genes, quantitative trait loci, and strains. We present an overview of the database followed by specific examples that can be used to gain experience in employing RGD to explore the wealth of functional data available for the rat.作者: conception 時間: 2025-3-29 14:22
Die zwei Grundwortpaare: ICH-DU und ICH-ESovide several ways of exploring the data including a choice of genome browsers, genome and gene summary pages, text and sequence searching, a query wizard, bulk downloads, and programmatic interfaces. WormBase ParaSite is released three to six times per year, and is developed in collaboration with WormBase (.) and Ensembl Genomes (.).作者: LIMIT 時間: 2025-3-29 17:16 作者: 染色體 時間: 2025-3-29 20:03 作者: Jacket 時間: 2025-3-30 00:24 作者: Rinne-Test 時間: 2025-3-30 04:21 作者: 帶來 時間: 2025-3-30 10:16 作者: 易發(fā)怒 時間: 2025-3-30 16:03
,A Primer for the?Rat Genome Database (RGD),sociations, phenotypes, pathways, molecular functions, biological processes and cellular components for genes, quantitative trait loci, and strains. We present an overview of the database followed by specific examples that can be used to gain experience in employing RGD to explore the wealth of functional data available for the rat.作者: 叢林 時間: 2025-3-30 16:34 作者: Lamina 時間: 2025-3-30 21:23 作者: infinite 時間: 2025-3-31 03:45
Dialogic Education and Technologychapter serves as an introduction describing how to search the database in order to discover new information. We introduce the different types of pages on the website, and describe how to manipulate the tables and diagrams therein to display, download, or analyze the data using various SGD tools.作者: Palatial 時間: 2025-3-31 05:02 作者: floodgate 時間: 2025-3-31 13:01
https://doi.org/10.1007/978-3-658-11843-3cies-omics properties. Recent focus has been on inclusion of gene and protein expression data, population genomics and cross-kingdom interactions (metagenomics datasets). This chapter describes the website, the available tools and some of the new features.作者: conference 時間: 2025-3-31 17:25 作者: Cardiac 時間: 2025-3-31 19:20 作者: 民間傳說 時間: 2025-4-1 00:34 作者: 專橫 時間: 2025-4-1 04:22 作者: 背景 時間: 2025-4-1 06:42
Dialogic Education and Technologyic sequence of this highly studied organism, SGD provides integrated data regarding gene functions and phenotypes, which are extracted from the published literature. The vast amount and variety of data housed in the database can prove challenging to navigate for the first-time user. Therefore, this 作者: 生命 時間: 2025-4-1 13:14
Cushla Kapitzke,Peter D. Renshawenes and proteins, and aid in interpreting newly generated experimental data. The . Genome Database (CGD) curates the . literature, and integrates functional information about . genes and their products with a set of analysis tools that facilitate searching for sets of genes and exploring their biol作者: 谷類 時間: 2025-4-1 15:02 作者: 同謀 時間: 2025-4-1 20:45 作者: 勤勉 時間: 2025-4-2 02:28 作者: 不來 時間: 2025-4-2 05:19
Daniel C. O’Connell,Sabine Kowal is to help researchers investigate the genetic foundations of human diseases by translating information from mouse phenotypes and disease models studies to human systems. MGI provides comprehensive phenotypes for over 50,000 mutant alleles in mice and provides experimental model descriptions for ov
