標(biāo)題: Titlebook: Computational Methods in Systems Biology; 19th International C Eugenio Cinquemani,Lo?c Paulevé Conference proceedings 2021 Springer Nature [打印本頁] 作者: ISH 時間: 2025-3-21 18:12
書目名稱Computational Methods in Systems Biology影響因子(影響力)
書目名稱Computational Methods in Systems Biology影響因子(影響力)學(xué)科排名
書目名稱Computational Methods in Systems Biology網(wǎng)絡(luò)公開度
書目名稱Computational Methods in Systems Biology網(wǎng)絡(luò)公開度學(xué)科排名
書目名稱Computational Methods in Systems Biology被引頻次
書目名稱Computational Methods in Systems Biology被引頻次學(xué)科排名
書目名稱Computational Methods in Systems Biology年度引用
書目名稱Computational Methods in Systems Biology年度引用學(xué)科排名
書目名稱Computational Methods in Systems Biology讀者反饋
書目名稱Computational Methods in Systems Biology讀者反饋學(xué)科排名
作者: Madrigal 時間: 2025-3-21 22:55 作者: 演繹 時間: 2025-3-22 01:39
,Greening R. Thomas’ Framework with Environment Variables: A Divide and Conquer Approach,servations are often made under experimental conditions which are not necessarily comparable since they depend on the culture medium for example. The construction of a right modelisation therefore depends on our ability to take into account all this information in a single framework.作者: Encephalitis 時間: 2025-3-22 07:09 作者: 玉米 時間: 2025-3-22 10:59 作者: Campaign 時間: 2025-3-22 13:51 作者: Campaign 時間: 2025-3-22 20:18 作者: 阻塞 時間: 2025-3-23 00:24 作者: 大廳 時間: 2025-3-23 01:23
Microbial Community Decision Making Models in Batch and Chemostat Cultures,n microbiome. Such simulations rely on assumptions about the culturing environment, affecting if the culture may reach a metabolically stationary state with constant microbial concentrations. They also require assumptions on decision making by the microbes: metabolic strategies can be in the interes作者: perjury 時間: 2025-3-23 08:46
Learning Boolean Controls in Regulated Metabolic Networks: A Case-Study,verse-engineer Boolean regulations for transcriptional and signaling networks, but they fail to infer regulations that control metabolic networks. This paper provides a formalisation of the inference of regulations for metabolic networks as a satisfiability problem with two levels of quantifiers, an作者: Regurgitation 時間: 2025-3-23 12:44
Population Design for Synthetic Gene Circuits,le, biomedical or industrial applications. Computer-aided design methods have been developed to help choose appropriate network structures and biological parts for a given design objective. However, they almost always model the behavior of the network in an average cell, despite pervasive cell-to-ce作者: organic-matrix 時間: 2025-3-23 13:52 作者: 幻影 時間: 2025-3-23 22:07
Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivatioll level. Mathematical modelling of this stochastic phenomenon enables us to elucidate the underlying molecular mechanisms quantitatively. Here we present a two-stage stochastic gene expression model that extends the standard model by an mRNA inactivation loop. The extended model exhibits smaller pr作者: cogent 時間: 2025-3-24 00:24
LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales,ers. Such models describe deterministic or stochastic monomolecular chemical reaction networks, but also random walks on weighted protein-protein interaction networks, spreading of infectious diseases and opinion in social networks, communication in computer networks. The reduced network is obtained作者: botany 時間: 2025-3-24 02:26 作者: 舊病復(fù)發(fā) 時間: 2025-3-24 09:49 作者: THE 時間: 2025-3-24 12:57
BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems,at solves diffusive transport Partial Differential Equations for 3-D biological simulations successfully applied to tissue and cancer biology problems. Currently, BioFVM is only shared-memory parallelized using OpenMP, greatly limiting the execution of large-scale jobs in HPC clusters. We present Bi作者: Indelible 時間: 2025-3-24 15:26 作者: 舊式步槍 時間: 2025-3-24 22:26
Intelligence and Intelligence Testing,an alternative semantics that propagates values from one occurrence of a variable to other ones, and show that this novel approach permits a more efficient pattern matching algorithm. We confirm this theoretical result by benchmarking proof-of-concept implementations of both approaches.作者: 明確 時間: 2025-3-25 00:38
Mila Schwartz,Victor Moin,Manal Klayleady-state distribution of active and inactive mRNA and protein species. We determine its generating function and derive a recursive formula for the protein distribution. The results of the analytical formula are cross-validated by kinetic Monte-Carlo simulation.作者: 濕潤 時間: 2025-3-25 06:59 作者: Omniscient 時間: 2025-3-25 08:35
,Nonlinear Pattern Matching in?Rule-Based Modeling Languages,an alternative semantics that propagates values from one occurrence of a variable to other ones, and show that this novel approach permits a more efficient pattern matching algorithm. We confirm this theoretical result by benchmarking proof-of-concept implementations of both approaches.作者: BLINK 時間: 2025-3-25 11:59 作者: 我要威脅 時間: 2025-3-25 19:38 作者: Constitution 時間: 2025-3-25 20:18 作者: fatty-streak 時間: 2025-3-26 02:58
Debra Jackson,Patricia M. Davidson,Kim Ushernumber of covariates of interest has become very large, with new statistical issues to consider. We present and test a few recent neural network approaches for survival analysis adapted to high-dimensional inputs.作者: habitat 時間: 2025-3-26 06:59
Abdulrahman AI-Youbi,Adnan H. M. Zaheddividual parameters of the model and also provide all functions of parameters that are identifiable (also called identifiable combinations) from single or multiple experiments. The program is freely available at ..作者: geometrician 時間: 2025-3-26 08:55 作者: Vertical 時間: 2025-3-26 14:20 作者: Pruritus 時間: 2025-3-26 19:32
Schools as Learning Communities,s paper provides a formalisation of the inference of regulations for metabolic networks as a satisfiability problem with two levels of quantifiers, and introduces a method based on Answer Set Programming to solve this problem on a small-scale example.作者: Chromatic 時間: 2025-3-26 21:23
Automated Inference of Production Rules for Glycans,. The rules by which the enzymes operate are not fully understood. In this paper, we present the first SMT-solver-based iterative method that infers the assembly process of the glycans by analyzing the set of glycans from a cell. We have built a tool based on the method and applied it to infer rules based on published glycan data.作者: FRONT 時間: 2025-3-27 04:57 作者: PURG 時間: 2025-3-27 08:39
Conference proceedings 2021rdeaux, France, September 22–24, 2021.*The 13 full papers and 5 tool papers were carefully reviewed and selected from 32 submissions. The topics of interest include?biological process modelling; biological system model verification, validation, analysis, and simulation; high-performance computationa作者: 侵害 時間: 2025-3-27 12:56
Overview of decision-making procedureies of the original BN can be exactly restored. We show the effectiveness of BBE by performing a large-scale validation on the whole GINsim BN repository. In selected cases, we show how our method enables analyses that would be otherwise intractable. Our method complements, and can be combined with, other reduction methods found in the literature.作者: 跑過 時間: 2025-3-27 15:39 作者: Gossamer 時間: 2025-3-27 19:08
https://doi.org/10.1007/978-3-030-25525-1 and shows promising scalability in large 3-D problems with several hundreds diffusible substrates and .0.5 billion voxels. The BioFVM-X source code, examples and documentation, are available under the BSD 3-Clause license at ..作者: filicide 時間: 2025-3-27 22:24 作者: 平項山 時間: 2025-3-28 02:26
LNetReduce: Tool for Reducing Linear Dynamic Networks with Separated Timescales,hon with a graphical user interface. We discuss applications of LNetReduce to network design and to the study of the fundamental relation between timescales and topology in complex dynamic networks.. the code, documentation and application examples are available at ..作者: 招惹 時間: 2025-3-28 06:30
BioFVM-X: An MPI+OpenMP 3-D Simulator for Biological Systems, and shows promising scalability in large 3-D problems with several hundreds diffusible substrates and .0.5 billion voxels. The BioFVM-X source code, examples and documentation, are available under the BSD 3-Clause license at ..作者: 倔強一點 時間: 2025-3-28 12:40
Perspective Management Strategies,me input species, into a finite CRN. We illustrate the performance of our compiler on a benchmark of elementary functions relevant to CRN design problems in synthetic biology specified by mathematical functions. In particular, the abstract CRN obtained by compilation of the Hill function of order 5 作者: ENACT 時間: 2025-3-28 17:52
Perspective Management Strategies,the reduced model harder to interpret..We design and implement an algorithm that, given an exact linear reduction, re-parametrizes it by performing an invertible transformation of the new coordinates to improve the interpretability of the new variables. We apply our algorithm to three case studies a作者: 無能力 時間: 2025-3-28 21:52
Debra Jackson,Patricia M. Davidson,Kim Ushertificial neural network (ANN) based strategy to identify a proteomic signature that helps discriminating patients at low and high risk of recurrence. In a first stage, we implemented a Repeated Editing Nearest Neighbors algorithm to select a homogeneous sub-sample of VTE patients. This sub-sample wa作者: 微生物 時間: 2025-3-29 01:59
https://doi.org/10.1007/978-3-319-11176-6 assumption combinations give qualitatively different predictions on microbial coexistence by differential substrate utilization. This fundamental mechanism is critically under explored in the steady state GSM literature with its strong focus on coexistence states due to crossfeeding (division of la作者: blight 時間: 2025-3-29 06:41 作者: Ganglion 時間: 2025-3-29 08:11
Successful Family Language Policyr efficiency gains when the number of applicable reactions in a configuration becomes small. As a Python library, . also includes many useful tools for data visualization in Jupyter notebooks, allowing robust visualization of time dynamics such as histogram plots at time snapshots and averaging repe作者: 現(xiàn)實 時間: 2025-3-29 11:53 作者: Climate 時間: 2025-3-29 19:32
Interpretable Exact Linear Reductions via Positivity,the reduced model harder to interpret..We design and implement an algorithm that, given an exact linear reduction, re-parametrizes it by performing an invertible transformation of the new coordinates to improve the interpretability of the new variables. We apply our algorithm to three case studies a作者: COLON 時間: 2025-3-29 20:18 作者: Conclave 時間: 2025-3-30 00:01 作者: STALE 時間: 2025-3-30 05:04 作者: enmesh 時間: 2025-3-30 09:37
Ppsim: A Software Package for Efficiently Simulating and Visualizing Population Protocols,r efficiency gains when the number of applicable reactions in a configuration becomes small. As a Python library, . also includes many useful tools for data visualization in Jupyter notebooks, allowing robust visualization of time dynamics such as histogram plots at time snapshots and averaging repe作者: 率直 時間: 2025-3-30 15:59 作者: FANG 時間: 2025-3-30 17:20 作者: GAVEL 時間: 2025-3-30 22:00 作者: 任命 時間: 2025-3-31 03:58 作者: 粗語 時間: 2025-3-31 08:19
Information procurement decisions fields. The associated Markov stochastic process in continuous time is often analyzed by simulation, which can be costly for large or stiff systems, particularly when a massive number of simulations has to be performed (e.g. in a multi-scale model). A strategy to reduce computational load is to abs作者: 精致 時間: 2025-3-31 09:53
Developing and evaluating optionsservations are often made under experimental conditions which are not necessarily comparable since they depend on the culture medium for example. The construction of a right modelisation therefore depends on our ability to take into account all this information in a single framework.作者: 中世紀(jì) 時間: 2025-3-31 15:13 作者: 燕麥 時間: 2025-3-31 20:45
