標(biāo)題: Titlebook: Computational Methods in Systems Biology; 21st International C Jun Pang,Joachim Niehren Conference proceedings 2023 The Editor(s) (if appli [打印本頁] 作者: FAULT 時間: 2025-3-21 19:58
書目名稱Computational Methods in Systems Biology影響因子(影響力)
書目名稱Computational Methods in Systems Biology影響因子(影響力)學(xué)科排名
書目名稱Computational Methods in Systems Biology網(wǎng)絡(luò)公開度
書目名稱Computational Methods in Systems Biology網(wǎng)絡(luò)公開度學(xué)科排名
書目名稱Computational Methods in Systems Biology被引頻次
書目名稱Computational Methods in Systems Biology被引頻次學(xué)科排名
書目名稱Computational Methods in Systems Biology年度引用
書目名稱Computational Methods in Systems Biology年度引用學(xué)科排名
書目名稱Computational Methods in Systems Biology讀者反饋
書目名稱Computational Methods in Systems Biology讀者反饋學(xué)科排名
作者: adipose-tissue 時間: 2025-3-22 00:18
,Cell-Level Pathway Scoring Comparison with?a?Biologically Constrained Variational Autoencoder, learned by the model as proxies of the signaling activity at the single-cell level. We check the performance of the scoring model using a known scRNA-seq public dataset with a clearly established ground truth. Although both models capture the relevant signals, the most pronounced differences are be作者: carotenoids 時間: 2025-3-22 03:07 作者: 消散 時間: 2025-3-22 04:39
,Harissa: Stochastic Simulation and?Inference of?Gene Regulatory Networks Based on?Transcriptional Bin this context. Therefore, Harissa can be used both as an inference tool, to reconstruct biologically relevant networks from time-course scRNA-seq data, and as a simulation tool, to generate quantitative gene expression profiles in a non-trivial way through gene interactions.作者: 充滿裝飾 時間: 2025-3-22 10:42 作者: countenance 時間: 2025-3-22 16:37 作者: countenance 時間: 2025-3-22 18:42 作者: pulmonary 時間: 2025-3-22 22:51 作者: FLORA 時間: 2025-3-23 03:18 作者: 殺子女者 時間: 2025-3-23 05:54 作者: CALL 時間: 2025-3-23 10:09
https://doi.org/10.1007/978-3-642-00854-2 derivative CRN, most of which being models of oscillators and control systems in the cell, and discuss in detail two such examples: one model of the circadian clock and one model of a bistable switch.作者: Indict 時間: 2025-3-23 16:03
Information procurement decisionsin this context. Therefore, Harissa can be used both as an inference tool, to reconstruct biologically relevant networks from time-course scRNA-seq data, and as a simulation tool, to generate quantitative gene expression profiles in a non-trivial way through gene interactions.作者: antiquated 時間: 2025-3-23 22:04
Overview of decision-making procedurefference between the output variables in the original and reduced model, is in the order of .. Furthermore, we provide a heuristic algorithm to find the smallest . for a given maximal approximation error. Finally, we demonstrate the approach in biological models from the literature by providing coar作者: semiskilled 時間: 2025-3-23 22:41 作者: gusher 時間: 2025-3-24 05:53 作者: MIR 時間: 2025-3-24 09:23
Conference proceedings 2023ected from 28 submissions. CMSB focuses on modeling, simulation, analysis, design and control of biological systems and covers the broad field of computational methods and tools in systems and synthetic biology and their applications. ?.作者: Phonophobia 時間: 2025-3-24 11:51 作者: 不開心 時間: 2025-3-24 15:31 作者: 昏迷狀態(tài) 時間: 2025-3-24 22:29
Developing and evaluating optionsl framework) or both cells (population framework). For both frameworks, we find an exact time-independent distribution of protein concentration and cell volume. We explore the consequences of dilution feedback on ergodicity, population growth rate, and the bias of the population distribution towards faster growing cells with less protein.作者: Morphine 時間: 2025-3-25 00:32
,Attractor Identification in?Asynchronous Boolean Dynamics with?Network Reduction,of candidate attractor states, which are then screened with techniques of reachability analysis combined with trap space computation. An implementation that brings together recently developed Boolean network analysis tools, tested on biological models and random benchmark networks, shows the potential to significantly reduce running times.作者: 碎片 時間: 2025-3-25 07:23
,Joint Distribution of?Protein Concentration and?Cell Volume Coupled by?Feedback in?Dilution,l framework) or both cells (population framework). For both frameworks, we find an exact time-independent distribution of protein concentration and cell volume. We explore the consequences of dilution feedback on ergodicity, population growth rate, and the bias of the population distribution towards faster growing cells with less protein.作者: formula 時間: 2025-3-25 10:24 作者: 使入迷 時間: 2025-3-25 14:56
Information procurement decisionsh scenario in a formal language. We then make use of a prototype software tool to formally assess whether such specifications would indeed replicate the expected collective behaviour of the colony as a whole.作者: ethereal 時間: 2025-3-25 19:50 作者: Directed 時間: 2025-3-25 20:19 作者: 細(xì)微的差異 時間: 2025-3-26 01:00 作者: BRUNT 時間: 2025-3-26 08:20
,Intuitive Modelling and?Formal Analysis of?Collective Behaviour in?Foraging Ants,h scenario in a formal language. We then make use of a prototype software tool to formally assess whether such specifications would indeed replicate the expected collective behaviour of the colony as a whole.作者: Inveterate 時間: 2025-3-26 11:03 作者: Ornament 時間: 2025-3-26 15:46 作者: 圖表證明 時間: 2025-3-26 19:54
,SAF: SAT-Based Attractor Finder in?Asynchronous Automata Networks,s fail to do so. We observed such capability on both automata networks and Boolean networks. . is simple to use: it is available as a command line tool as well as a web application. Finally, . being written in Scala, it can run on any operating system with a Java virtual machine when combined with the SAT solver ..作者: 難解 時間: 2025-3-26 22:24
0302-9743 held in Luxembourg City, Luxembourg, during September 13–15, 2023...The 14 full papers and 3 tool papers presented in this book were carefully reviewed and selected from 28 submissions. CMSB focuses on modeling, simulation, analysis, design and control of biological systems and covers the broad fie作者: inferno 時間: 2025-3-27 01:11 作者: Prologue 時間: 2025-3-27 06:15
Developing and evaluating optionstions in three-dimensional domains. The work compares two HCA approaches reproducing critical spatiotemporal phenomena and contrasts them with well-established model formulations. We discuss the limits and applicability of discrete vs. continuum approaches in view of improved numerical performances.作者: 知識分子 時間: 2025-3-27 09:53 作者: N防腐劑 時間: 2025-3-27 16:15
,3D Hybrid Cellular Automata for?Cardiac Electrophysiology: A Concept Study,tions in three-dimensional domains. The work compares two HCA approaches reproducing critical spatiotemporal phenomena and contrasts them with well-established model formulations. We discuss the limits and applicability of discrete vs. continuum approaches in view of improved numerical performances.作者: 貨物 時間: 2025-3-27 18:37
https://doi.org/10.1007/978-3-031-42697-1systems biology; formal methods; reaction networks; Boolean networks; mathematical models; hybrid models; 作者: Intercept 時間: 2025-3-28 00:44 作者: defendant 時間: 2025-3-28 05:45
Lecture Notes in Computer Sciencehttp://image.papertrans.cn/c/image/232788.jpg作者: overshadow 時間: 2025-3-28 06:14
Computational Methods in Systems Biology978-3-031-42697-1Series ISSN 0302-9743 Series E-ISSN 1611-3349 作者: 蟄伏 時間: 2025-3-28 12:14 作者: 揉雜 時間: 2025-3-28 17:03 作者: lactic 時間: 2025-3-28 21:29 作者: ERUPT 時間: 2025-3-28 23:33
Overview of the decision-making procedure interactions is not completely known. Phenotype control aims to stabilise the network in states exhibiting specific traits..In this paper, we define the phenotype control problem in the context of asynchronous PSBNs and propose a novel semi-symbolic algorithm for solving this problem with permanent作者: Institution 時間: 2025-3-29 03:21
Information procurement decisionsems. To that end, we consider the case of a colony of foraging ants, where, for the combined effect of known biological mechanisms such as stigmergic interaction, pheromone release, and path integration, the ants will progressively work out the shortest path to move back and forth between their nest作者: 燦爛 時間: 2025-3-29 11:02
Developing and evaluating optionsParticularly, unsupervised deep learning models provide state-of-the-art solutions for the most common tasks that arise when dealing with scRNA-seq data. However, the biological usefulness of these complex models is burdened by their black-box nature. To address such limitations several lines of res作者: IRATE 時間: 2025-3-29 13:16 作者: apropos 時間: 2025-3-29 17:10
Information procurement decisionshin a cell, are often regarded as virtually deterministic dynamical systems. However, this view is now being challenged by the fundamentally stochastic, ‘bursty’ nature of gene expression revealed at the single cell level. We present a Python package called Harissa which is dedicated to simulation a作者: inspiration 時間: 2025-3-29 20:57
Overview of decision-making procedure reduction techniques can be used to project the system onto a lower-dimensional state space. Constrained lumping can reduce systems of ordinary differential equations with polynomial derivatives up to linear combinations of the original variables while preserving specific output variables of intere作者: Intact 時間: 2025-3-30 03:20 作者: Constitution 時間: 2025-3-30 07:55 作者: Deduct 時間: 2025-3-30 11:42 作者: buoyant 時間: 2025-3-30 14:54
Information procurement decisionsta networks. . is based on translating the problem of finding attractors of a bounded size into a satisfiability problem to take advantage of state-of-the-art SAT encodings and solvers. . accepts an automata network and outputs attractors in ascending size order until the bound is reached. .’s main 作者: Sigmoidoscopy 時間: 2025-3-30 20:26 作者: 來這真柔軟 時間: 2025-3-30 23:11
Information procurement decisionsn of potential variants. We describe an approach to the search for asynchronous cyclic attractors of Boolean networks that exploits, in a novel way, the established technique of elimination of components. Computation of attractors of simplified networks allows the identification of a limited number 作者: blackout 時間: 2025-3-31 01:52
Developing and evaluating optionscal and computational models offer an ethical alternative to in-vivo analyses of cardiac electrophysiological properties. However, the inherent multiscale complexity of the underlying nonlinear dynamics still limits model applicability and predictability. In previous contributions, we implemented a 作者: 背信 時間: 2025-3-31 07:23 作者: TSH582 時間: 2025-3-31 09:47
Developing and evaluating optionsa positive feedback loop on the protein concentration. We couple the feedback model with a simple description of the cell cycle, in which a division event is triggered when the cell volume reaches a critical threshold. Following the division we either track only one of the daughter cells (single cel作者: 發(fā)炎 時間: 2025-3-31 16:20 作者: sed-rate 時間: 2025-3-31 21:02
,Phenotype Control of?Partially Specified Boolean Networks, interactions is not completely known. Phenotype control aims to stabilise the network in states exhibiting specific traits..In this paper, we define the phenotype control problem in the context of asynchronous PSBNs and propose a novel semi-symbolic algorithm for solving this problem with permanent作者: Conquest 時間: 2025-3-31 23:07 作者: 奇怪 時間: 2025-4-1 04:42
,Cell-Level Pathway Scoring Comparison with?a?Biologically Constrained Variational Autoencoder,Particularly, unsupervised deep learning models provide state-of-the-art solutions for the most common tasks that arise when dealing with scRNA-seq data. However, the biological usefulness of these complex models is burdened by their black-box nature. To address such limitations several lines of res作者: Conquest 時間: 2025-4-1 06:31
,On Estimating Derivatives of?Input Signals in?Biochemistry, (CRN), this raises however a number of specific issues on the different ways to achieve it. A CRN pattern for implementing a derivative block has already been proposed for the PID control of biochemical processes, and proved correct using Tikhonov’s limit theorem. In this paper, we give a detailed
