標(biāo)題: Titlebook: Comparative Genomics; International Worksh Francesca D. Ciccarelli,István Miklós Conference proceedings 2009 Springer-Verlag Berlin Heidelb [打印本頁] 作者: amateur 時(shí)間: 2025-3-21 19:40
書目名稱Comparative Genomics影響因子(影響力)
書目名稱Comparative Genomics影響因子(影響力)學(xué)科排名
書目名稱Comparative Genomics網(wǎng)絡(luò)公開度
書目名稱Comparative Genomics網(wǎng)絡(luò)公開度學(xué)科排名
書目名稱Comparative Genomics被引頻次
書目名稱Comparative Genomics被引頻次學(xué)科排名
書目名稱Comparative Genomics年度引用
書目名稱Comparative Genomics年度引用學(xué)科排名
書目名稱Comparative Genomics讀者反饋
書目名稱Comparative Genomics讀者反饋學(xué)科排名
作者: drusen 時(shí)間: 2025-3-21 22:54 作者: 加花粗鄙人 時(shí)間: 2025-3-22 01:40
Parking Functions, Labeled Trees and DCJ Sorting Scenarios, This problem is related to the uniform generation of rearrangement scenarios, and the derivation of tests of statistical significance of the properties of these scenarios. Here we give an exact formula for the number of double-cut-and-join (DCJ) rearrangement scenarios of co-tailed genomes. We also作者: 反抗者 時(shí)間: 2025-3-22 07:31 作者: Minatory 時(shí)間: 2025-3-22 09:57
Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction, set of rows that does not have the C1P, but every proper subset has the C1P. Such submatrices have been considered in comparative genomics applications, but very little is known about their combinatorial structure and efficient algorithms to compute them. We first describe an algorithm that detects作者: 離開可分裂 時(shí)間: 2025-3-22 13:26
Finding Nested Common Intervals Efficiently,as permutations or as sequences. Considering permutations, we give several algorithms whose running time depends on the size of the actual output rather than the output in the worst case. Indeed, we first provide a straightforward .(..) time algorithm for finding all nested common intervals. We redu作者: 離開可分裂 時(shí)間: 2025-3-22 20:15 作者: evince 時(shí)間: 2025-3-22 23:11
Rearrangement Models and Single-Cut Operations,precisely defined, the general notion of a model remains undefined. In this paper, we give a formal set-theoretic definition, which allows us to investigate and prove relationships between distances under various existing and new models. We also initiate the formal study of single-cut operations by 作者: 射手座 時(shí)間: 2025-3-23 01:35 作者: OVERT 時(shí)間: 2025-3-23 07:01
Inferring the Recent Duplication History of a Gene Cluster,ract evolutionary information from sequence data for such clusters are currently imperfect, in part because accurate sequence data are often lacking in these genomic regions, making the existing methods difficult to apply. We describe a new method for reconstructing the recent evolutionary history o作者: 最高峰 時(shí)間: 2025-3-23 12:46 作者: 辮子帶來幫助 時(shí)間: 2025-3-23 14:45 作者: 草本植物 時(shí)間: 2025-3-23 19:27
Reconstructing Histories of Complex Gene Clusters on a Phylogeny, to functional analysis. These clusters are one of the major sources of evolutionary innovation, and they are linked to multiple diseases, including HIV and a variety of cancers. Understanding their evolutionary histories is a key to the application of comparative genomics methods in these regions o作者: 小臼 時(shí)間: 2025-3-23 22:14
Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biothe most parsimonious ancestral genomes usually include considerable error rates. In general, these errors cannot be abolished by utilizing more exhaustive computational approaches, by using longer genomic sequences, or by analyzing more taxa. In recent studies we showed that co-evolution is an impo作者: carotenoids 時(shí)間: 2025-3-24 03:09 作者: grounded 時(shí)間: 2025-3-24 07:39 作者: Abrupt 時(shí)間: 2025-3-24 12:57
Comparative Genomics and Extensive Recombinations in Phage Communities,to each genome. When several closely related genomes are compared, the unique sequences are likely to be shared with third genomes, leading to virus mosaic communities. Here we present comparative analysis of sets of . phages that share large identical sequences with up to three other genomes, and w作者: 遵循的規(guī)范 時(shí)間: 2025-3-24 15:01
Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralling pathways and has provided organisms a level of genetic robustness. We studied the long-term evolution and interrelationships of 5’ upstream regulatory sequences (URSs), protein coding sequences (CDSs) and expression correlations (EC) of duplicated gene pairs in Arabidopsis. Three distinct metho作者: 漸強(qiáng) 時(shí)間: 2025-3-24 22:48
Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to hm for assessing the conservation of predicted binding occupancy that does not rely on sequence alignment of promoters. The method, which we call ortholog-weighting, assesses the degree to which the predicted binding occupancy of a transcription factor in a reference gene is also predicted in the pr作者: 并置 時(shí)間: 2025-3-24 23:57 作者: languor 時(shí)間: 2025-3-25 03:37 作者: 斜谷 時(shí)間: 2025-3-25 11:01 作者: 油氈 時(shí)間: 2025-3-25 12:25 作者: Incompetent 時(shí)間: 2025-3-25 19:37
Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to analyses suggest that ortholog-weighting improves the prediction of true regulatory targets. Interestingly, the method has only a marginal effect on the prediction of binding by chromatin immunoprecipitation (ChIP) assays. We suggest several possibilities for reconciling this result with the improve作者: Abrade 時(shí)間: 2025-3-25 20:34
Conference proceedings 2009selected for oral p- sentation from 31 submissions from scientists around the world. Each paper was reviewed by at least three members of the Program Committee in a stringent and thoughtful peer-review process.作者: Critical 時(shí)間: 2025-3-26 02:00
0302-9743 ings were selected for oral p- sentation from 31 submissions from scientists around the world. Each paper was reviewed by at least three members of the Program Committee in a stringent and thoughtful peer-review process.978-3-642-04743-5978-3-642-04744-2Series ISSN 0302-9743 Series E-ISSN 1611-3349 作者: osculate 時(shí)間: 2025-3-26 04:31
https://doi.org/10.1007/978-3-642-57066-7e DCJ median problem on linear multichromosomal genomes by a ., a model that avoids another computationally difficult problem—a multi-way capping problem for linear genomes, then establish its corresponding decomposition theory, and finally show its results on genomes with up to several thousand gen作者: 我說不重要 時(shí)間: 2025-3-26 10:48 作者: Humble 時(shí)間: 2025-3-26 16:41
ATP Hydrolysis and Synthesis Mechanismsn of recombination networks. These findings have several implications on phage metagenomics assembly, on the horizontal gene transfer paradigm, and more generally on the understanding of the composition and evolutionary dynamics of virus communities.作者: 細(xì)節(jié) 時(shí)間: 2025-3-26 17:27
ATP Hydrolysis and Synthesis Mechanismsor activity was associated with gene pairs exhibiting conserved URSs and divergent CDSs, whereas a broad array of metabolic enzymes was found to be associated with gene pairs showing diverged URSs but conserved CDSs.作者: 深淵 時(shí)間: 2025-3-26 21:35
Molecular Biology Intelligence Unitanalyses suggest that ortholog-weighting improves the prediction of true regulatory targets. Interestingly, the method has only a marginal effect on the prediction of binding by chromatin immunoprecipitation (ChIP) assays. We suggest several possibilities for reconciling this result with the improve作者: Senescent 時(shí)間: 2025-3-27 01:24
Signal Transduction and the Gasotransmitterssion events in about 13.5% of them. Properties of the putative gene conversions are analyzed, such as the lengths of the paralogous pairs and the spacing between their sources and targets. Our approach is illustrated using conversion events in the beta-globin gene cluster.作者: 不利 時(shí)間: 2025-3-27 05:26
https://doi.org/10.1007/978-1-4684-1407-3imulations under various hypotheses about breakpoint re-use. Reconstructions based on rearrangement distance are superior in terms of branch length and dispersion of the multiple optimal reconstructions, but simulations show that both sets of reconstructions are equally close to the simulated ancestors.作者: angiography 時(shí)間: 2025-3-27 09:47
Progress in Experimental Cardiologyify what we can expect from their usage. Both methods propose contiguous ancestral regions that come very close (>?95% identity) to the manually predicted ancestral yeast chromosomes, with a good coverage of the extant genomes.作者: 按等級(jí) 時(shí)間: 2025-3-27 17:40
R. D. Edstrom,J. S. Bishop,M. H. Meinke of optimal DCJ sorting sequences to a particular subset of instances of the problem. In addition, this formula is also a lower bound to the number of sorting sequences to any instance of the problem.作者: SKIFF 時(shí)間: 2025-3-27 18:54 作者: NAVEN 時(shí)間: 2025-3-27 22:33 作者: CRACY 時(shí)間: 2025-3-28 03:23
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods,ify what we can expect from their usage. Both methods propose contiguous ancestral regions that come very close (>?95% identity) to the manually predicted ancestral yeast chromosomes, with a good coverage of the extant genomes.作者: 自愛 時(shí)間: 2025-3-28 07:09 作者: 說笑 時(shí)間: 2025-3-28 13:03
Pseudo Boolean Programming for Partially Ordered Genomes,ing approach to compute a linear extension of one genome that maximizes the number of common intervals (resp. the number of adjacencies) between this linear extension and a given total order. Next, we propose an algorithm to find linear extensions of two partial orders that maximize the number of adjacencies.作者: GRIN 時(shí)間: 2025-3-28 18:07 作者: 大氣層 時(shí)間: 2025-3-28 22:40 作者: 凹處 時(shí)間: 2025-3-28 23:29
Madhu B. Anand-Srivastava,Malika Boumati, and find natural values for these parameters. One has to do with the parameter value where the expected information contained in two genomes about each other is maximized. The other has to do with parameter values beyond which all genes are clustered. We analyse these using combinatorial and probabilistic arguments as well as simulations.作者: 做作 時(shí)間: 2025-3-29 07:06
H. H. Ruf,M. Rack,W. Landgraf,F. Hofmannes of these scenarios. Here we give an exact formula for the number of double-cut-and-join (DCJ) rearrangement scenarios of co-tailed genomes. We also construct effective bijections between the set of scenarios that sort a cycle and well studied combinatorial objects such as parking functions and labeled trees.作者: micronutrients 時(shí)間: 2025-3-29 08:23 作者: 外表讀作 時(shí)間: 2025-3-29 15:03 作者: Fierce 時(shí)間: 2025-3-29 18:28 作者: neutral-posture 時(shí)間: 2025-3-29 23:04 作者: anticipate 時(shí)間: 2025-3-30 00:45 作者: 看法等 時(shí)間: 2025-3-30 05:39
Rearrangement Models and Single-Cut Operations,tigate and prove relationships between distances under various existing and new models. We also initiate the formal study of single-cut operations by giving a linear time algorithm for the distance problem under a new single-cut and join model.作者: 預(yù)示 時(shí)間: 2025-3-30 10:53 作者: FILTH 時(shí)間: 2025-3-30 16:10
Inferring the Recent Duplication History of a Gene Cluster,n these genomic regions, making the existing methods difficult to apply. We describe a new method for reconstructing the recent evolutionary history of gene clusters. The method’s performance is evaluated on simulated data and on actual human gene clusters.作者: depreciate 時(shí)間: 2025-3-30 18:35 作者: 攀登 時(shí)間: 2025-3-30 22:32
https://doi.org/10.1007/978-3-642-57066-7g only the maximal nested common intervals can be done in linear time. Considering sequences, we provide solutions (modifications of previously defined algorithms and a new algorithm) for different variants of the problem, depending on the treatment one wants to apply to duplicated genes.作者: bleach 時(shí)間: 2025-3-31 02:30
Synthesis and Metabolism of Carbon Monoxideries from genomic sequences in multiple species. Several projects are underway to obtain high quality BAC-based assemblies of duplicated clusters in multiple species, and we anticipate use of our methods in their analysis. Supplementary materials are located at .作者: 救護(hù)車 時(shí)間: 2025-3-31 08:59 作者: ELUDE 時(shí)間: 2025-3-31 12:44
Finding Nested Common Intervals Efficiently,g only the maximal nested common intervals can be done in linear time. Considering sequences, we provide solutions (modifications of previously defined algorithms and a new algorithm) for different variants of the problem, depending on the treatment one wants to apply to duplicated genes.作者: Resistance 時(shí)間: 2025-3-31 15:28
Reconstructing Histories of Complex Gene Clusters on a Phylogeny,ries from genomic sequences in multiple species. Several projects are underway to obtain high quality BAC-based assemblies of duplicated clusters in multiple species, and we anticipate use of our methods in their analysis. Supplementary materials are located at .作者: 肉體 時(shí)間: 2025-3-31 21:28 作者: 胰臟 時(shí)間: 2025-3-31 22:10 作者: 乞丐 時(shí)間: 2025-4-1 03:08 作者: 雪上輕舟飛過 時(shí)間: 2025-4-1 06:13
Lecture Notes in Computer Sciencehttp://image.papertrans.cn/c/image/230897.jpg作者: 鎮(zhèn)壓 時(shí)間: 2025-4-1 11:59
https://doi.org/10.1007/978-3-642-04744-2Promoter; ancestral genomes; calculus; co-evolution; comparative genomics; computational genomics; conserv作者: CORE 時(shí)間: 2025-4-1 16:33
978-3-642-04743-5Springer-Verlag Berlin Heidelberg 2009作者: languid 時(shí)間: 2025-4-1 21:12
Comparative Genomics978-3-642-04744-2Series ISSN 0302-9743 Series E-ISSN 1611-3349
