作者: Madrigal 時間: 2025-3-21 20:57 作者: TRUST 時間: 2025-3-22 01:20 作者: 有常識 時間: 2025-3-22 07:39
Succincter Text Indexing with Wildcardsllions of single nucleotide polymorphisms (SNPs) —positions known to differ between individuals. SNPs modeled as wildcards can lead to more informed and biologically relevant alignments. We improve the space complexity of previous approaches by giving a succinct index requiring (2?+?.(1)). log.?+?.(作者: diskitis 時間: 2025-3-22 11:14
Self-indexing Based on LZ77llections such as sequence databases of genomes of related species, software repositories, versioned document collections, and temporal text databases. Such collections are extremely compressible but classical self-indexes fail to capture that source of compressibility. Our self-index takes in pract作者: 撤退 時間: 2025-3-22 13:45 作者: 撤退 時間: 2025-3-22 20:48
A ,-Step Approach for Distinct Squares in Stringss both the length . and .???. where . is the size of the alphabet. We conjecture that a string of length . and containing . distinct symbols has no more than .???. distinct squares, show the critical role played by strings satisfying .?=?2., and present some properties satisfied by strings of length作者: 堅毅 時間: 2025-3-23 00:20 作者: 慢跑 時間: 2025-3-23 01:36 作者: Basal-Ganglia 時間: 2025-3-23 07:38
Phylogenetic Footprinting and Consistent Sets of Local Aligmentsetic footprinting, a technique used to identify regulatory elements by comparative sequence analysis. Based on a theoretical discussion of the problem we devise an efficient heuristic and introduce the software tool . for this task. Tests on both biological and random data demonstrated the heuristic作者: canvass 時間: 2025-3-23 12:03
Fast Error-Tolerant Quartet Phylogeny Algorithmsrtet is inconsistent with the true tree topology with constant probability, independent of other quartets. Our incremental algorithm relies upon a search tree structure for the phylogeny that is balanced, with high probability, no matter the true topology. In experiments, our prototype was as fast a作者: 發(fā)牢騷 時間: 2025-3-23 16:59 作者: 信任 時間: 2025-3-23 20:08 作者: Bouquet 時間: 2025-3-23 23:13 作者: 慢跑鞋 時間: 2025-3-24 04:34 作者: medium 時間: 2025-3-24 10:20
C. P. Chandrika,Jagadish S. Kallimanire than .???. distinct squares, show the critical role played by strings satisfying .?=?2., and present some properties satisfied by strings of length bounded by a constant times the size of the alphabet.作者: 窒息 時間: 2025-3-24 13:07
Role of Satellites in Agriculture,of the alignment algorithm when certain nodes in the trees are pre-aligned by a so-called anchoring. Both enhancements are included in a new implementation of the tool .. We also argue that tree alignment should be parameterized by a user-described set of edit operations, generalizing over the traditional, atomic edit operations.作者: 闖入 時間: 2025-3-24 16:24 作者: 江湖郎中 時間: 2025-3-24 19:55
A ,-Step Approach for Distinct Squares in Stringsre than .???. distinct squares, show the critical role played by strings satisfying .?=?2., and present some properties satisfied by strings of length bounded by a constant times the size of the alphabet.作者: PANG 時間: 2025-3-24 23:17 作者: adequate-intake 時間: 2025-3-25 05:29 作者: Condense 時間: 2025-3-25 10:40
Self-indexing Based on LZ77ice a few times the space of the text compressed with LZ77 (as little as 2.5 times), extracts 1–2 million characters of the text per second, and finds patterns at a rate of 10–50 microseconds per occurrence. It is smaller (up to one half) than the best current self-index for repetitive collections, and faster in many cases.作者: 沉著 時間: 2025-3-25 12:17 作者: Expediency 時間: 2025-3-25 18:40
Conference proceedings 2011ne 2011. .The 36 revised full papers presented together with 3 invited talks were carefully reviewed and selected from 70 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees, regular expressions, graphs, point sets, and arrays. The goa作者: Inflammation 時間: 2025-3-25 21:05 作者: 咆哮 時間: 2025-3-26 00:44 作者: 可觸知 時間: 2025-3-26 06:05
Conference proceedings 2011 for the corresponding computational problems or pinpoint conditions under which searches cannot be performed efficiently. The meeting also deals with problems in computational biology, data compression and data mining, coding, information retrieval, natural language processing and pattern recognition.作者: Spina-Bifida 時間: 2025-3-26 12:12
Lecture Notes in Educational Technologyern matching with character classes, we give Ω(.) bit space lower bounds. For other distance functions, we show that there exist space bounds of Ω(log.) and .(log..) bits. Finally we discuss space lower bounds for non-binary inputs and show how in some cases they can be improved.作者: 要素 時間: 2025-3-26 16:04 作者: confederacy 時間: 2025-3-26 17:21 作者: 傻瓜 時間: 2025-3-27 00:28 作者: Bmd955 時間: 2025-3-27 04:34
N. Pothirasan,M. Pallikonda Rajasekarantures when it comes to binding site usage and tissue specific regulation. The dichotomy is further supported by an analysis of histone modifications in the promoters. Taken together, we interpret this as indication that different regulatory mechanisms govern transcription in these two classes of pro作者: Assault 時間: 2025-3-27 07:02 作者: obsession 時間: 2025-3-27 13:07
Smart Innovation, Systems and Technologiesene repetitions so as to maximize the number of adjacencies between the two resulting sequences; namely, given an incomplete genome . and a complete genome ., both with gene repetitions, fill in the missing genes to obtain .′ such that the number of adjacencies between .′ and . is maximized. We prov作者: 粗魯性質(zhì) 時間: 2025-3-27 16:58 作者: Accessible 時間: 2025-3-27 21:02
Computational Regulatory Genomicstures when it comes to binding site usage and tissue specific regulation. The dichotomy is further supported by an analysis of histone modifications in the promoters. Taken together, we interpret this as indication that different regulatory mechanisms govern transcription in these two classes of pro作者: N防腐劑 時間: 2025-3-28 00:56 作者: atrophy 時間: 2025-3-28 02:30
Filling Scaffolds with Gene Repetitions: Maximizing the Number of Adjacenciesene repetitions so as to maximize the number of adjacencies between the two resulting sequences; namely, given an incomplete genome . and a complete genome ., both with gene repetitions, fill in the missing genes to obtain .′ such that the number of adjacencies between .′ and . is maximized. We prov作者: Trigger-Point 時間: 2025-3-28 07:14 作者: Gleason-score 時間: 2025-3-28 11:56
Lecture Notes in Computer Sciencehttp://image.papertrans.cn/c/image/230010.jpg作者: 敘述 時間: 2025-3-28 15:16 作者: 的’ 時間: 2025-3-28 21:30 作者: 時間等 時間: 2025-3-29 02:23 作者: CUB 時間: 2025-3-29 05:32
Jessica Blakeborough,Triin RoosaluThis paper presents a real-time randomized streaming string matching algorithm that uses .(log.) space. The algorithm only makes one-sided small probability false-positive errors, possibly reporting phantom occurrences of the pattern, but never misses an actual occurrence.作者: TOXIC 時間: 2025-3-29 07:13
Smart Cities and Smart Regions RoadmapWe use a simple observation about the locations of . to derive a real-time variation of the Crochemore-Perrin constant-space string matching algorithm. The real-time variation has a simple and efficient control structure.作者: Arbitrary 時間: 2025-3-29 15:12
Algorithms on Grammar-Compressed StringsGrammar based compression, where one replaces a long string by a small contextfree grammar that generates the string, is a simple and powerful paradigm that captures many of the popular compression schemes, including the Lempel-Ziv family, Run-Length Encoding, Byte-Pair Encoding, Sequitur and Re-Pair.作者: uveitis 時間: 2025-3-29 18:57
String Comparison and Lyndon-Like Factorization Using V-Order in Linear TimeIn this paper we extend previous work on Unique Maximal Factorization Families (UMFFs) and a total (but non-lexicographic) ordering of strings called V-order. We describe linear-time algorithms for string comparison and Lyndon factorization based on V-order. We propose extensions of these algorithms to other forms of order.作者: POWER 時間: 2025-3-29 20:19 作者: 強制性 時間: 2025-3-30 00:14 作者: Retrieval 時間: 2025-3-30 07:42
Simple Real-Time Constant-Space String MatchingWe use a simple observation about the locations of . to derive a real-time variation of the Crochemore-Perrin constant-space string matching algorithm. The real-time variation has a simple and efficient control structure.作者: ascetic 時間: 2025-3-30 11:06
Combinatorial Pattern Matching978-3-642-21458-5Series ISSN 0302-9743 Series E-ISSN 1611-3349 作者: Infect 時間: 2025-3-30 14:36 作者: Redundant 時間: 2025-3-30 20:07 作者: 背叛者 時間: 2025-3-30 20:55 作者: 憤慨點吧 時間: 2025-3-31 01:32 作者: 治愈 時間: 2025-3-31 07:29 作者: 能夠支付 時間: 2025-3-31 12:11
Tractability Results for the Consecutive-Ones Property with Multiplicityder here a variant of the C1P where columns can appear multiple times in the ordering. Although the general problem of deciding the C1P with multiplicity is NP-complete, we present here a case of interest in comparative genomics that is tractable.作者: 小故事 時間: 2025-3-31 16:53
Phylogenetic Footprinting and Consistent Sets of Local Aligmentsetic footprinting, a technique used to identify regulatory elements by comparative sequence analysis. Based on a theoretical discussion of the problem we devise an efficient heuristic and introduce the software tool . for this task. Tests on both biological and random data demonstrated the heuristic yields excellent results at very short runtimes.作者: 輕打 時間: 2025-3-31 20:14
On Wavelet Tree Construction indexed pattern matching and data compression. In contrast to applications of wavelet trees their construction has so far been paid little attention. In this paper we discuss time and space efficient algorithms for constructing wavelet trees.作者: 思考 時間: 2025-3-31 22:24
Piet Christof W?lcken,Michael Papadopoulosthe humanities. Several recent articles have demonstrated the application of pattern analysis techniques to the discovery of non-trivial relations in various datasets that have relevance for social and human sciences, and some have even heralded the advent of “Computational Social Sciences” and “Cul作者: 2否定 時間: 2025-4-1 04:20
N. Pothirasan,M. Pallikonda Rajasekaranlso encrypted in the DNA sequence. In order to unravel this other genetic code, regulatory genomics attempts to integrate functional genomics data with sequence data. This talk will summarize several approaches developed in our group, starting with a biophysically motivated method for prediction of 作者: 角斗士 時間: 2025-4-1 09:24
Rajesh Vemulakonda,Ketha Venkateshlinear time algorithms for the detection of all maximal repetitions (runs) in a string. In this paper, we present two new linear time algorithms: the first one is the fastest and the second is the most space-efficient among all LZ-factorization algorithms known so far.
