標(biāo)題: Titlebook: Algorithms in Bioinformatics; 16th International W Martin‘Frith,Christian N?rgaard Storm Pedersen Conference proceedings 2016 Springer Inte [打印本頁(yè)] 作者: Chylomicron 時(shí)間: 2025-3-21 19:23
書(shū)目名稱Algorithms in Bioinformatics影響因子(影響力)
書(shū)目名稱Algorithms in Bioinformatics影響因子(影響力)學(xué)科排名
書(shū)目名稱Algorithms in Bioinformatics網(wǎng)絡(luò)公開(kāi)度
書(shū)目名稱Algorithms in Bioinformatics網(wǎng)絡(luò)公開(kāi)度學(xué)科排名
書(shū)目名稱Algorithms in Bioinformatics被引頻次
書(shū)目名稱Algorithms in Bioinformatics被引頻次學(xué)科排名
書(shū)目名稱Algorithms in Bioinformatics年度引用
書(shū)目名稱Algorithms in Bioinformatics年度引用學(xué)科排名
書(shū)目名稱Algorithms in Bioinformatics讀者反饋
書(shū)目名稱Algorithms in Bioinformatics讀者反饋學(xué)科排名
作者: 花爭(zhēng)吵 時(shí)間: 2025-3-21 21:48
A Biclique Approach to Reference Anchored Gene Blocks and Its Applications to Pathogenicity IslandsNA element, a window size bound . on the length of a substring of interest in ., and a set of target gene sequences .. Our objective is to identify gene-blocks in . that are centered in a subset . of co-localized genes from ., and contain genomes from . in which the corresponding orthologs of the ge作者: 新義 時(shí)間: 2025-3-22 02:11
An Efficient Branch and Cut Algorithm to Find Frequently Mutated Subnetworks in Cancer,dentify the handful of driver mutations responsible for cancer among the hundreds or thousands mutations present in a tumour genome. Recent approaches have shown that analyzing mutations in the context of interaction networks increases the power to identify driver mutations..In this work we propose 作者: Coronary 時(shí)間: 2025-3-22 05:35 作者: arthroscopy 時(shí)間: 2025-3-22 09:23 作者: elucidate 時(shí)間: 2025-3-22 14:45
SpecTrees: An Efficient Without a Priori Data Structure for MS/MS Spectra Identification,S spectra per sample, each one having to be compared to a large reference database from which artificial spectra are produced. The goal is to map each experimental spectrum to an artificial one, so as to identify the proteins they come from. However, this comparison step is highly time consuming. Th作者: obscurity 時(shí)間: 2025-3-22 20:57
Predicting Core Columns of Protein Multiple Sequence Alignments for Improved Parameter Advising,ld-standard reference alignment of its proteins. In benchmark suites of protein reference alignments, the core columns of the reference are those that can be confidently labeled as correct, usually due to all residues in the column being sufficiently close in the spatial superposition of the folded 作者: Cupping 時(shí)間: 2025-3-22 21:39
Fast Compatibility Testing for Phylogenies with Nested Taxa,root node is labeled Rodentia, which itself could nest within a subtree whose root is labeled Mammalia. Suppose we are given collection . of semi-labeled trees over various subsets of a set of taxa. The ancestral compatibility problem asks whether there is a semi-labeled tree . that respects the clu作者: 全部 時(shí)間: 2025-3-23 01:40 作者: OGLE 時(shí)間: 2025-3-23 07:10 作者: CAGE 時(shí)間: 2025-3-23 10:28
Copy-Number Evolution Problems: Complexity and Algorithms, of mutations are copy number aberrations, which alter the number of copies of genomic regions. The number of copies of each position along a chromosome constitutes the chromosome’s copy-number profile. Understanding how such profiles evolve in cancer can assist in both diagnosis and prognosis. We m作者: 語(yǔ)言學(xué) 時(shí)間: 2025-3-23 17:43
,: A Fast and Memory-Efficient ,-mer Counter with GPU-Support,ome sequence. We present the open source?.-mer counting software . that has been designed for the efficient counting of?.-mers for?.. Given the technology trend towards long reads of next-generation sequencers, support for large?. becomes increasingly important. While existing?.-mer counting tools s作者: 影響 時(shí)間: 2025-3-23 21:24
Genome Rearrangements on Both Gene Order and Intergenic Regions,ive genes, although it was recently shown decisive for the accuracy of the inference methods?[., .]. In this line, we define a new genome rearrangement model called wDCJ, a generalization of the well-known Double Cut and Join (or DCJ) model that allows for modifying both the gene order . the interge作者: bromide 時(shí)間: 2025-3-24 01:37
Better Identification of Repeats in Metagenomic Scaffolding,ng-read sequencing technologies, in metagenomic data intra-genome and, more importantly, inter-genome repeats continue to be a significant impediment to effective genome reconstruction. Detecting repeats in metagenomic samples is complicated by characteristic features of these data, primarily uneven作者: 侵蝕 時(shí)間: 2025-3-24 02:57
A Better Scoring Model for De Novo Peptide Sequencing: The Symmetric Difference Between Explained aasses. The inverse problem is the .: Given all prefix and suffix masses, determine the string of amino acids. In biological reality, the given masses are measured in a lab experiment, and measurements by necessity are noisy. The (real, noisy) . therefore has a noisy input: a few of the prefix and su作者: coddle 時(shí)間: 2025-3-24 10:07
,,: Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Grained from molecular dynamics simulations. RNA molecules are well-suited for this representation due to their composition which is mainly modular and assessable by the secondary structure alone. Each adjacency matrix represents the interactions of . nucleotides. We then define transitions between sta作者: fringe 時(shí)間: 2025-3-24 12:11
Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis, of such analysis is a reduction to a maximum-weight connected subgraph problem. In particular, in analysis of metabolic networks a generalized maximum-weight connected subgraph (GMWCS) problem, where both nodes and edges are scored, naturally arises. Here we present the first to our knowledge pract作者: Esalate 時(shí)間: 2025-3-24 16:47 作者: 蒙太奇 時(shí)間: 2025-3-24 19:38 作者: rheumatism 時(shí)間: 2025-3-25 02:29
https://doi.org/10.1007/978-3-663-09646-7reviously proposed greedy and approximation algorithms. We test our algorithm on real cancer data and show that our approach is viable and allows for the identification of subnetworks containing known cancer genes.作者: tympanometry 時(shí)間: 2025-3-25 06:11 作者: aesthetic 時(shí)間: 2025-3-25 09:06
Aktuelle Entwicklungen auf nationaler Ebene, stored at a working disk. In a second step, the temporary files are read again, split into?.-mers and counted via a hash table approach. In addition, . can optionally use GPUs to accelerate the counting step. For large?., we outperform state-of-the-art open source?.-mer counting tools by up?to a factor of?4 for large genome data sets.作者: 他很靈活 時(shí)間: 2025-3-25 12:11
Aktuelle Entwicklungen auf nationaler Ebene,formulation. We finally provide theoretical and empirical bounds on the expected growth of the parameter at the center of our FPT and ILP algorithms, assuming a probabilistic model of evolution under wDCJ, which shows that both these algorithms should run reasonably fast in practice.作者: 單挑 時(shí)間: 2025-3-25 15:55 作者: neuron 時(shí)間: 2025-3-25 21:38
An Efficient Branch and Cut Algorithm to Find Frequently Mutated Subnetworks in Cancer,reviously proposed greedy and approximation algorithms. We test our algorithm on real cancer data and show that our approach is viable and allows for the identification of subnetworks containing known cancer genes.作者: 痛打 時(shí)間: 2025-3-26 02:39 作者: faucet 時(shí)間: 2025-3-26 07:19
,: A Fast and Memory-Efficient ,-mer Counter with GPU-Support, stored at a working disk. In a second step, the temporary files are read again, split into?.-mers and counted via a hash table approach. In addition, . can optionally use GPUs to accelerate the counting step. For large?., we outperform state-of-the-art open source?.-mer counting tools by up?to a factor of?4 for large genome data sets.作者: 游行 時(shí)間: 2025-3-26 10:35
Genome Rearrangements on Both Gene Order and Intergenic Regions,formulation. We finally provide theoretical and empirical bounds on the expected growth of the parameter at the center of our FPT and ILP algorithms, assuming a probabilistic model of evolution under wDCJ, which shows that both these algorithms should run reasonably fast in practice.作者: FIS 時(shí)間: 2025-3-26 16:42 作者: 改進(jìn) 時(shí)間: 2025-3-26 20:12
Conference proceedings 2016The 25 full papers ?together with 2 invited talks presented were carefullyreviewed and selected from 54 submissions..The selected papers cover a wide range of topics from networks, to.phylogenetic studies, sequence and genome analysis, comparative genomics, and?mass spectrometry data analysis.?.作者: bisphosphonate 時(shí)間: 2025-3-26 21:42 作者: Basal-Ganglia 時(shí)間: 2025-3-27 02:22 作者: INCH 時(shí)間: 2025-3-27 06:48
Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis,ical exact GMWCS solver. We have tested it on real-world instances and compared to similar solvers. First, the results show that on node-weighted instances GMWCS solver has a similar performance to the best solver for that problem. Second, GMWCS solver is faster compared to the closest analogue when run on GMWCS instances with edge weights.作者: 不舒服 時(shí)間: 2025-3-27 10:11
Drei Welten in der Welt, mit Zufall,which achieves a 13?/?4-approximation for the general MPSM problem using a new combinatorial triplet matching approach. During publication of this paper,?[.] presented a local search algorithm yielding 7?/?2, which falls in between the previous best and this paper. The remainder of the paper has not been altered to reflect this.作者: 偽書(shū) 時(shí)間: 2025-3-27 16:24
Aktuelle Entwicklungen auf nationaler Ebene,ion graph for satisfiability and consistency, when a degree of confidence is assigned to each orthology or paralogy relation, leading to a weighted relation graph. We provide complexity and algorithmic results for minimizing corrections on a weighted graph, and also for the maximization variant of the problems for unweighted graphs.作者: 吸氣 時(shí)間: 2025-3-27 20:27 作者: irreducible 時(shí)間: 2025-3-27 22:51 作者: FILLY 時(shí)間: 2025-3-28 05:58
Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results,ion graph for satisfiability and consistency, when a degree of confidence is assigned to each orthology or paralogy relation, leading to a weighted relation graph. We provide complexity and algorithmic results for minimizing corrections on a weighted graph, and also for the maximization variant of the problems for unweighted graphs.作者: 帶來(lái) 時(shí)間: 2025-3-28 08:50 作者: 主動(dòng)脈 時(shí)間: 2025-3-28 13:39
0302-9743 missions..The selected papers cover a wide range of topics from networks, to.phylogenetic studies, sequence and genome analysis, comparative genomics, and?mass spectrometry data analysis.?.978-3-319-43680-7978-3-319-43681-4Series ISSN 0302-9743 Series E-ISSN 1611-3349 作者: 啞巴 時(shí)間: 2025-3-28 17:56 作者: 減去 時(shí)間: 2025-3-28 19:20 作者: FLAG 時(shí)間: 2025-3-28 23:46
https://doi.org/10.1007/978-3-86226-343-1ical exact GMWCS solver. We have tested it on real-world instances and compared to similar solvers. First, the results show that on node-weighted instances GMWCS solver has a similar performance to the best solver for that problem. Second, GMWCS solver is faster compared to the closest analogue when run on GMWCS instances with edge weights.作者: FLING 時(shí)間: 2025-3-29 06:31
0302-9743 atics, WABI 2016, held in Aarhus, Denmark. The 25 full papers ?together with 2 invited talks presented were carefullyreviewed and selected from 54 submissions..The selected papers cover a wide range of topics from networks, to.phylogenetic studies, sequence and genome analysis, comparative genomics,作者: 索賠 時(shí)間: 2025-3-29 08:10 作者: AV-node 時(shí)間: 2025-3-29 13:06 作者: GLUE 時(shí)間: 2025-3-29 16:50 作者: Distribution 時(shí)間: 2025-3-29 22:25
https://doi.org/10.1007/978-3-663-09646-7dentify the handful of driver mutations responsible for cancer among the hundreds or thousands mutations present in a tumour genome. Recent approaches have shown that analyzing mutations in the context of interaction networks increases the power to identify driver mutations..In this work we propose 作者: 無(wú)關(guān)緊要 時(shí)間: 2025-3-30 03:01 作者: Inflamed 時(shí)間: 2025-3-30 06:52 作者: Mundane 時(shí)間: 2025-3-30 11:51
Die blaue Stunde der InformatikS spectra per sample, each one having to be compared to a large reference database from which artificial spectra are produced. The goal is to map each experimental spectrum to an artificial one, so as to identify the proteins they come from. However, this comparison step is highly time consuming. Th作者: Instantaneous 時(shí)間: 2025-3-30 15:03
https://doi.org/10.1007/978-3-662-42992-1ld-standard reference alignment of its proteins. In benchmark suites of protein reference alignments, the core columns of the reference are those that can be confidently labeled as correct, usually due to all residues in the column being sufficiently close in the spatial superposition of the folded 作者: CLAIM 時(shí)間: 2025-3-30 19:46 作者: 飛鏢 時(shí)間: 2025-3-30 23:45
https://doi.org/10.1007/3-540-30519-Xnment, but work directly on a sequence similarity graph. We present a model for constructing a median of three genomes in this family-free setting, based on maximizing an objective function that generalizes the classical breakpoint distance by integrating sequence similarity in the score of a gene a作者: Living-Will 時(shí)間: 2025-3-31 02:12
Aktuelle Entwicklungen auf nationaler Ebene,presenting paralogs. While a gene tree directly leads to a set of orthology and paralogy relations, the converse is not always true. Indeed a relation graph cannot necessarily be inferred from any tree, and even if it is “satisfiable” by a tree, this tree is not necessarily “consistent”, i.e. does n作者: detach 時(shí)間: 2025-3-31 07:36 作者: 興奮過(guò)度 時(shí)間: 2025-3-31 11:40
Aktuelle Entwicklungen auf nationaler Ebene,ome sequence. We present the open source?.-mer counting software . that has been designed for the efficient counting of?.-mers for?.. Given the technology trend towards long reads of next-generation sequencers, support for large?. becomes increasingly important. While existing?.-mer counting tools s作者: chandel 時(shí)間: 2025-3-31 17:10 作者: Bureaucracy 時(shí)間: 2025-3-31 18:58
Aktuelle Entwicklungen auf nationaler Ebene,ng-read sequencing technologies, in metagenomic data intra-genome and, more importantly, inter-genome repeats continue to be a significant impediment to effective genome reconstruction. Detecting repeats in metagenomic samples is complicated by characteristic features of these data, primarily uneven作者: Herbivorous 時(shí)間: 2025-3-31 22:36
https://doi.org/10.1007/3-540-30519-Xasses. The inverse problem is the .: Given all prefix and suffix masses, determine the string of amino acids. In biological reality, the given masses are measured in a lab experiment, and measurements by necessity are noisy. The (real, noisy) . therefore has a noisy input: a few of the prefix and su作者: 決定性 時(shí)間: 2025-4-1 05:28 作者: cyanosis 時(shí)間: 2025-4-1 07:42
https://doi.org/10.1007/978-3-86226-343-1 of such analysis is a reduction to a maximum-weight connected subgraph problem. In particular, in analysis of metabolic networks a generalized maximum-weight connected subgraph (GMWCS) problem, where both nodes and edges are scored, naturally arises. Here we present the first to our knowledge pract作者: Repatriate 時(shí)間: 2025-4-1 13:56 作者: Preserve 時(shí)間: 2025-4-1 14:25
Thomas Schumacher Dipl.-Soz.p?d. (BA), (MA) the model are well understood, but formulating and implementing efficient inference methods remains a challenge. A major breakthrough has been to approximate the coalescent with recombination by a Markov chain along the sequences. Here we describe a new tool, RECJumper, for inference in the Markov 作者: larder 時(shí)間: 2025-4-1 21:26
https://doi.org/10.1007/978-3-319-43681-4bioinformatics; complexity; computational biology; phylogenetics; synthetic biology; algorithm analysis a作者: 因無(wú)茶而冷淡 時(shí)間: 2025-4-2 00:30
978-3-319-43680-7Springer International Publishing Switzerland 2016
