標題: Titlebook: Algorithms in Bioinformatics; 11th International W Teresa M. Przytycka,Marie-France Sagot Conference proceedings 2011 Springer-Verlag GmbH [打印本頁] 作者: 氣泡 時間: 2025-3-21 17:18
書目名稱Algorithms in Bioinformatics影響因子(影響力)
書目名稱Algorithms in Bioinformatics影響因子(影響力)學科排名
書目名稱Algorithms in Bioinformatics網絡公開度
書目名稱Algorithms in Bioinformatics網絡公開度學科排名
書目名稱Algorithms in Bioinformatics被引頻次
書目名稱Algorithms in Bioinformatics被引頻次學科排名
書目名稱Algorithms in Bioinformatics年度引用
書目名稱Algorithms in Bioinformatics年度引用學科排名
書目名稱Algorithms in Bioinformatics讀者反饋
書目名稱Algorithms in Bioinformatics讀者反饋學科排名
作者: Trochlea 時間: 2025-3-21 21:12
978-3-642-23037-0Springer-Verlag GmbH Berlin Heidelberg 2011作者: Locale 時間: 2025-3-22 01:46
Empirische Untersuchung der 1990er Jahre,equences of predetermined markers, for example protein coding genes or other functional elements. However, markers defined in this way ignore information included in non-coding sequences, are prone to errors in annotation, and may even introduce artifacts due to partial gene copies or chimeric genes作者: Invigorate 時間: 2025-3-22 07:42
Empirische Untersuchung der 1950er Jahre,pology, our algorithm has high probability of returning the correct phylogeny when quartet errors are independent and occur with known probability, and when the algorithm uses a guide tree on .( loglog.) taxa that is correct with high probability. In practice, none of these assumptions is correct: q作者: Stagger 時間: 2025-3-22 12:21
https://doi.org/10.1007/978-3-658-44000-8s of individuals such that the number of generations, the number of crossings, and the required populations size are minimized. We present for the first time a mathematical model for the general problem variant and show that the problem is .-hard and even hard to approximate. On the positive side, w作者: Lucubrate 時間: 2025-3-22 16:40 作者: Limerick 時間: 2025-3-22 18:32 作者: MARS 時間: 2025-3-22 21:40
Spezifizierung des Lerngegenstandspertrees these methods produce are conservative in the sense that they only preserve information (in the form of splits) that is supported by at least one the input trees and that is not contradicted by any of the input trees. Alternative, equivalent, formulations of these supertrees are developed. 作者: EVADE 時間: 2025-3-23 03:01
Erkenntnisinteresse und -fragen, which partially mimic the interface area of one of the interacting proteins, are natural candidates to form protein-peptide complexes competing with the original PPI [3, 4]. Some inhibitory peptides were designed by deriving a short linear segment from one of the proteins in a given PPI complex [5作者: 類型 時間: 2025-3-23 05:31 作者: 疼死我了 時間: 2025-3-23 13:25
Empirische Befunde: Forschungsprodukte(TF). Building an accurate bioinformatic model of TF-DNA binding is an essential step to differentiate true binding targets from spurious ones. Conventional approches of binding site prediction are based on the notion of consensus sequences. They are formalized by the so-called position-specific wei作者: expdient 時間: 2025-3-23 15:45 作者: CYN 時間: 2025-3-23 21:37
https://doi.org/10.1007/978-3-476-03187-7onjecture on the necessary and sufficient conditions of compatibility: Given a set . of .-states full characters, there exists a function .(.) such that . is compatible iff every set of .(.) characters of . is compatible. According to [7,9,8,25,11,23], .(2)?=?2, .(3)?=?3 and .(.)?≥?.. [23] conjectur作者: 踉蹌 時間: 2025-3-24 01:12
https://doi.org/10.1007/978-3-642-91769-1ns and function annotations. Different from most, if not all, existing methods that only consider the partially labeled protein-protein interaction (PPI) network, the BG comprises three components, a PPI network, a function class graph induced from function annotations of such proteins, and a bipart作者: 腐蝕 時間: 2025-3-24 04:53
https://doi.org/10.1007/978-3-642-91769-1, Boolean logic, or Petri nets. However, when it is important to understand quantitative dynamic features of a system, uncertainty about the networks often limits large-scale model development. Recent results, especially from monotone systems theory, suggest that structural network constraints can a作者: 大笑 時間: 2025-3-24 07:33
Die Glykolyse und ihre Regulation,h the same is true in genome mapping of high-throughput short-read data. However, a highly sensitive search with multiple spaced patterns often requires the use of a great amount of index data. We propose a novel seed-set construction method for efficient and sensitive genome mapping of short reads 作者: abject 時間: 2025-3-24 13:38 作者: RUPT 時間: 2025-3-24 14:52 作者: Concrete 時間: 2025-3-24 19:40
https://doi.org/10.1007/978-3-642-47506-1likelihood (ML) or maximum a posterior (MAP) – are obtained and observation sequences are segmented based on the Viterbi path, even though the lack of accuracy and dependency on starting points of the local optimization are well known. We propose a method to speed-up Bayesian computations which addr作者: 窩轉脊椎動物 時間: 2025-3-25 02:24
https://doi.org/10.1007/978-3-658-03646-1minance and propose a novel combined approach based on Distance Alignment Search Tool (DAST), which contains an exact algorithm with bounds. Our experiments show that this method successfully finds the most similar proteins in a set without solving all instances.作者: 收養(yǎng) 時間: 2025-3-25 06:57
https://doi.org/10.1007/978-3-658-03646-1e them. The maximum likelihood estimation of frequencies of the sequences based on observed reads can be efficiently performed using expectation-maximization (EM) method assuming that we know sequences present in the sample. Frequently, such knowledge is incomplete, e.g., in RNA-seq not all isoforms作者: 漂亮才會豪華 時間: 2025-3-25 08:19 作者: thalamus 時間: 2025-3-25 12:30
K?lner Beitr?ge zur Didaktik der Mathematikline of research which attempts to adjust to each given set of input sequences a distance function which maximizes the expected accuracy of the reconstructed tree. We demonstrate both analytically and experimentally that by deliberately assuming an oversimplified evolutionary model, it is possible to increase the accuracy of reconstruction.作者: 朝圣者 時間: 2025-3-25 17:43 作者: 難理解 時間: 2025-3-25 20:10 作者: sperse 時間: 2025-3-26 00:31
Lecture Notes in Computer Sciencehttp://image.papertrans.cn/a/image/153262.jpg作者: Instrumental 時間: 2025-3-26 05:13
Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions,line of research which attempts to adjust to each given set of input sequences a distance function which maximizes the expected accuracy of the reconstructed tree. We demonstrate both analytically and experimentally that by deliberately assuming an oversimplified evolutionary model, it is possible to increase the accuracy of reconstruction.作者: conscribe 時間: 2025-3-26 11:47
Using Dominances for Solving the Protein Family Identification Problem,minance and propose a novel combined approach based on Distance Alignment Search Tool (DAST), which contains an exact algorithm with bounds. Our experiments show that this method successfully finds the most similar proteins in a set without solving all instances.作者: 泥土謙卑 時間: 2025-3-26 13:32
Conference proceedings 2011many, in September 2011. The 30 papers presented were carefully reviewed and selected from 77 submissions. They cover aspects of algorithms in bioinformatics, computational biology and systems biology.作者: 含鐵 時間: 2025-3-26 19:30
A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding,e present a mixed integer programming formulation that exploits the intrinsic combinatorial structure of the problem. We are able to solve a real-world instance to provable optimality in less than 2 seconds, which was not possible with earlier methods.作者: neuron 時間: 2025-3-26 23:50
,PepCrawler: A Fast RRT–Like Algorithm for High–Resolution Refinement and Binding–Affinity Estimatio-9]. These peptides were successfully able to inhibit interactions with the partner protein. The prediction of such complexes is especially challenging due to the high flexibility of peptide conformations.作者: 教義 時間: 2025-3-27 03:05 作者: 戰(zhàn)役 時間: 2025-3-27 06:16
Learning Protein Functions from Bi-relational Graph of Proteins and Function Annotations,ite graph induced from function assignments. By referring to proteins and function classes equally as vertices, we exploit . to measure how closely a specific function class is related to a protein of interest. The experiments on a yeast PPI network illustrate its effectiveness and efficiency.作者: HEPA-filter 時間: 2025-3-27 12:18
Conference proceedings 2011many, in September 2011. The 30 papers presented were carefully reviewed and selected from 77 submissions. They cover aspects of algorithms in bioinformatics, computational biology and systems biology.作者: hankering 時間: 2025-3-27 16:56
0302-9743 y reviewed and selected from 77 submissions. They cover aspects of algorithms in bioinformatics, computational biology and systems biology.978-3-642-23037-0978-3-642-23038-7Series ISSN 0302-9743 Series E-ISSN 1611-3349 作者: 蘑菇 時間: 2025-3-27 18:21 作者: AWRY 時間: 2025-3-27 22:11
Erkenntnisinteresse und -fragen-9]. These peptides were successfully able to inhibit interactions with the partner protein. The prediction of such complexes is especially challenging due to the high flexibility of peptide conformations.作者: 他去就結束 時間: 2025-3-28 06:03
https://doi.org/10.1007/978-3-476-03187-7ed that .(.)?=?. for any .?≥?2. In this paper, we present an example showing that .(4)?≥?5. Therefore it could be the case that for .?≥?4 characters the problem behavior drastically changes. In a second part, we propose a closure operation for chordal sandwich graphs. The later problem is a common approach of perfect phylogeny.作者: 高貴領導 時間: 2025-3-28 09:42 作者: moratorium 時間: 2025-3-28 14:14 作者: 用不完 時間: 2025-3-28 18:15 作者: 捏造 時間: 2025-3-28 21:02
Strukturierung des Lerngegenstandse implementation of the algorithm has been developed and applied to the assembly of simulated and experimental short reads. Our experiments show that our methods yields longer scaffolds than recent assemblers, and is capable of assembling diploid genomes significantly better than other greedy methods.作者: 適宜 時間: 2025-3-29 00:36 作者: reserve 時間: 2025-3-29 03:52
Beim Wiederlesen Gottfried Kellers,on literature, it is unclear how to use such approaches efficiently to construct a perfect phylogeny for three-state characters when the data admits one. We utilize structural properties of both the partition intersection graph and the original data in order to achieve a competitive time bound.作者: 身體萌芽 時間: 2025-3-29 09:26
Hydraulische Zuschl?ge (Tra?, Ziegelmehl) as the double cut and join (DCJ), it can support a mixture of different chromosomal architectures in the same tree. We show that . can outperform previously used steinerization framework and achieves better results on real data than previously published methods..Datasets, reconstructed histories, and the software can be downloaded at .作者: sparse 時間: 2025-3-29 15:10 作者: 爵士樂 時間: 2025-3-29 16:57
Automated Segmentation of DNA Sequences with Complex Evolutionary Histories,gn an algorithm for this problem which can tolerate certain amount of inaccuracies in the input alignments and still produce segmentation of the sequence to markers with high coverage and accuracy. We test our algorithm on several artificial and real data sets representing complex clusters of segmental duplications. Our software is available at .作者: 彎彎曲曲 時間: 2025-3-29 20:55
Localized Genome Assembly from Reads to Scaffolds: Practical Traversal of the Paired String Graph,e implementation of the algorithm has been developed and applied to the assembly of simulated and experimental short reads. Our experiments show that our methods yields longer scaffolds than recent assemblers, and is capable of assembling diploid genomes significantly better than other greedy methods.作者: 改良 時間: 2025-3-30 03:23 作者: 泥土謙卑 時間: 2025-3-30 06:09
Constructing Perfect Phylogenies and Proper Triangulations for Three-State Characters,on literature, it is unclear how to use such approaches efficiently to construct a perfect phylogeny for three-state characters when the data admits one. We utilize structural properties of both the partition intersection graph and the original data in order to achieve a competitive time bound.作者: 尋找 時間: 2025-3-30 09:44 作者: Mumble 時間: 2025-3-30 12:50 作者: Carbon-Monoxide 時間: 2025-3-30 17:19
Empirische Untersuchung der 1950er Jahre,ce nearly comparable to that of neighbour-joining, which requires .(..) runtime. Our results suggest a new direction for quartet-based phylogenetic reconstruction that may yield striking speed improvements at minimal accuracy cost.作者: 牙齒 時間: 2025-3-31 00:16 作者: adj憂郁的 時間: 2025-3-31 03:06
https://doi.org/10.1007/978-3-642-47506-1rvation sequence. Our experimental results on identification of segments of homogeneous nucleic acid composition, known as the DNA segmentation problem, show that the speed-up is also observed in practice... An implementation of our method will be available as part of the open source GHMM library from ..作者: chandel 時間: 2025-3-31 07:53
Towards a Practical ,(, log,) Phylogeny Algorithm,ce nearly comparable to that of neighbour-joining, which requires .(..) runtime. Our results suggest a new direction for quartet-based phylogenetic reconstruction that may yield striking speed improvements at minimal accuracy cost.作者: concise 時間: 2025-3-31 09:23 作者: MUMP 時間: 2025-3-31 13:29 作者: 夾死提手勢 時間: 2025-3-31 20:04 作者: 表皮 時間: 2025-3-31 23:24 作者: incarcerate 時間: 2025-4-1 05:48
Graph-Based Decomposition of Biochemical Reaction Networks into Monotone Subsystems,n to a medium-scale model for signaling pathways in yeast demonstrates that our algorithm yields efficient and biologically interpretable modularizations; both aspects are critical for extending the scope of (quantitative) cellular network analysis.作者: 減震 時間: 2025-4-1 06:26 作者: Lethargic 時間: 2025-4-1 12:00
K?lner Beitr?ge zur Didaktik der Mathematikes, and consider the optimization problem of removing the minimum number of leaves leading to a tree without any NAD vertex. We develop a polynomial-time algorithm that is exact for two special classes of gene trees, and show a good performance on simulated data sets in the general case.作者: admission 時間: 2025-4-1 15:26
Empirische Befunde: Forschungsprodukteng classifier that optimally combines a set of PWMs and chrommosal position based classifiers. This non-linear binding decision rule drastically reduces the rate of false positives so that .?consistently outperforms sequence-based methods. This is shown by implementing a cross-validation analysis in作者: 爆炸 時間: 2025-4-1 21:26
https://doi.org/10.1007/978-3-642-91769-1n to a medium-scale model for signaling pathways in yeast demonstrates that our algorithm yields efficient and biologically interpretable modularizations; both aspects are critical for extending the scope of (quantitative) cellular network analysis.作者: Anticoagulant 時間: 2025-4-2 00:58
Die gemeinsamen Forderungen der Zementnormenf distance-based phylogenetic inference from whole-genome data; our approach combines features of the jackknife and the bootstrap and remains nonparametric. For each feature of our method, we give an equivalent feature in the sequence-based framework; we also present the results of extensive experim作者: conflate 時間: 2025-4-2 02:51
Automated Segmentation of DNA Sequences with Complex Evolutionary Histories,equences of predetermined markers, for example protein coding genes or other functional elements. However, markers defined in this way ignore information included in non-coding sequences, are prone to errors in annotation, and may even introduce artifacts due to partial gene copies or chimeric genes
