標題: Titlebook: Algorithms for Computational Biology; First International Adrian-Horia Dediu,Carlos Martín-Vide,Bianca Truth Conference proceedings 2014 S [打印本頁] 作者: External-Otitis 時間: 2025-3-21 16:09
書目名稱Algorithms for Computational Biology影響因子(影響力)
書目名稱Algorithms for Computational Biology影響因子(影響力)學科排名
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書目名稱Algorithms for Computational Biology網(wǎng)絡公開度學科排名
書目名稱Algorithms for Computational Biology被引頻次
書目名稱Algorithms for Computational Biology被引頻次學科排名
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書目名稱Algorithms for Computational Biology年度引用學科排名
書目名稱Algorithms for Computational Biology讀者反饋
書目名稱Algorithms for Computational Biology讀者反饋學科排名
作者: Psa617 時間: 2025-3-21 20:30
A Greedy Algorithm for Hierarchical Complete Linkage Clusteringg a running time of . with a space requirement of . and one having a running time of . with a space requirement of Θ(..), where . is the number of points to be clustered. Both methods are not capable to handle large point sets. In this paper, we give an algorithm with a space requirement of . which 作者: Overdose 時間: 2025-3-22 01:47
Vester’s Sensitivity Model for Genetic Networks with Time-Discrete DynamicsThe gene expression data .. is given for various time points and the matrix . of interactions among the genes is unknown. First we formulate and solve a parameter estimation problem by linear programming in order to obtain the entries of the matrix .. We then use ideas from Vester’s ., more precisel作者: 食物 時間: 2025-3-22 06:22
Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem an undirected graph with no loop, and a perfect matching on this graph, find a set of cycles and paths covering every vertex of the graph, with edges alternatively in the matching and outside the matching, and satisfying a given constraint on the numbers of cycles and paths. We show that this probl作者: 虛構的東西 時間: 2025-3-22 11:41
Heuristics for the Sorting by Length-Weighted Inversions Problem on Signed Permutationser. In this work, we deal with inversion events, which occur when a segment of DNA sequence in the genome is reversed. In our model, each inversion costs the number of elements in the reversed segment. We present a new heuristic for this problem and we show that our method outperforms a previous app作者: mercenary 時間: 2025-3-22 16:54 作者: ADJ 時間: 2025-3-22 17:26
On Optimal Read Trimming in Next Generation Sequencing and Its Complexitycally, and algorithmic work in this area has been neglected. Here, we address this topic and formulate three constrained optimization problems for block-based trimming, i.e., truncating the same low-quality positions at both ends for all reads and removing low-quality truncated reads. We find that t作者: 不能根除 時間: 2025-3-23 00:00
On the Implementation of Quantitative Model Refinementased models and for .-based models. In this paper, we investigate and compare this approach in three different modeling frameworks: rule-based modeling, Petri nets and guarded command languages. As case study we use a model for the eukaryotic heat shock response that we refine to include the acetyla作者: Hearten 時間: 2025-3-23 04:16
HapMonster: A Statistically Unified Approach for Variant Calling and Haplotyping Based on Phase-Infoe of demographic history. One of approaches for estimating haplotypes is to use phase-informative reads, which span multiple heterozygous variant positions. Although the quality of estimated variants is crucial in haplotype phasing, accurate variant calling is still challenging due to errors on sequ作者: 勛章 時間: 2025-3-23 08:35
Mapping-Free and Assembly-Free Discovery of Inversion Breakpoints from Raw NGS Readsharacterized by a fixed size topological pattern in the .. We describe precisely the possible sources of false positives and false negatives and we additionally propose a sequence-based filter giving a good trade-off between precision and recall of the method. We implemented these ideas in a prototy作者: 套索 時間: 2025-3-23 11:39 作者: SPALL 時間: 2025-3-23 14:53
On Sorting of Signed Permutations by Prefix and Suffix Reversals and Transpositions segments. These are the most common kinds of genome rearrangements. In this paper, we introduce the study of prefix and suffix versions of these operations, that is, when only segments of the beginning or of the end are involved, when considering signed permutations. We gave asymptotic approximatio作者: 偉大 時間: 2025-3-23 21:37 作者: EVADE 時間: 2025-3-24 00:40 作者: 商業(yè)上 時間: 2025-3-24 05:10
On Algorithmic Complexity of Biomolecular Sequence Assembly Problems been formulated in simple and sometimes unrealistic string and graph-theoretic frameworks. This paper revisits this problem by re-examining the relationship between the most common formulations of the SAP and their computational tractability under different theoretical frameworks. For each formula作者: libertine 時間: 2025-3-24 06:49
A Closed-Form Solution for Transcription Factor Activity Estimation Using Network Component Analysisrol strengths and transcription factor activities. While NINCA provides good estimation accuracy and higher consistency, the costly optimization routine used therein renders a high computational complexity. This correspondence presents a closed form solution to estimate the connectivity matrix which作者: Hectic 時間: 2025-3-24 13:24 作者: 聯(lián)邦 時間: 2025-3-24 15:34
Analysis and Classification of Constrained DNA Elements with N-gram Graphs and Genomic Signaturestructure or the relative positioning of its constituent oligonucleotides. We here present a novel methodology that takes into account both word representation and relative positioning at various lengths scales in the form of n-gram graphs (NGG). We implemented the NGG approach on short vertebrate an作者: Project 時間: 2025-3-24 19:31
Inference of Boolean Networks from Gene?Interaction Graphs Using a SAT Solver biological constraints. A . is a directed graph representing positive and negative gene regulations. Depending on the biological problem being solved, the . can vary, and may include, for example, a desired set of stationary states. We present a ., SAT-based, method for inferring synchronous Boolea作者: gusher 時間: 2025-3-25 02:56 作者: colostrum 時間: 2025-3-25 04:27 作者: 銼屑 時間: 2025-3-25 09:39
https://doi.org/10.1007/978-3-319-07953-0algorithms; bioinformatics; combinatorics; computational biology; computational complexity; discrete math作者: Microaneurysm 時間: 2025-3-25 13:25 作者: extemporaneous 時間: 2025-3-25 17:20 作者: 津貼 時間: 2025-3-25 23:04 作者: 不自然 時間: 2025-3-26 01:59
https://doi.org/10.1007/978-3-662-06547-1The gene expression data .. is given for various time points and the matrix . of interactions among the genes is unknown. First we formulate and solve a parameter estimation problem by linear programming in order to obtain the entries of the matrix .. We then use ideas from Vester’s ., more precisel作者: Neonatal 時間: 2025-3-26 06:06 作者: 厚顏無恥 時間: 2025-3-26 09:16
https://doi.org/10.1007/978-3-662-06547-1er. In this work, we deal with inversion events, which occur when a segment of DNA sequence in the genome is reversed. In our model, each inversion costs the number of elements in the reversed segment. We present a new heuristic for this problem and we show that our method outperforms a previous app作者: compose 時間: 2025-3-26 16:02 作者: ESO 時間: 2025-3-26 19:10
Die Regulation der Nitritreduktase,cally, and algorithmic work in this area has been neglected. Here, we address this topic and formulate three constrained optimization problems for block-based trimming, i.e., truncating the same low-quality positions at both ends for all reads and removing low-quality truncated reads. We find that t作者: ERUPT 時間: 2025-3-27 00:15
Die Regulation der Nitritreduktase,ased models and for .-based models. In this paper, we investigate and compare this approach in three different modeling frameworks: rule-based modeling, Petri nets and guarded command languages. As case study we use a model for the eukaryotic heat shock response that we refine to include the acetyla作者: 勤勞 時間: 2025-3-27 03:05
Regulation der Nitratreduktase,e of demographic history. One of approaches for estimating haplotypes is to use phase-informative reads, which span multiple heterozygous variant positions. Although the quality of estimated variants is crucial in haplotype phasing, accurate variant calling is still challenging due to errors on sequ作者: Adulterate 時間: 2025-3-27 06:35 作者: Credence 時間: 2025-3-27 11:29 作者: 粘土 時間: 2025-3-27 16:50 作者: 吞下 時間: 2025-3-27 20:29 作者: 原始 時間: 2025-3-27 23:20
Der Stickstoffumsatz / Nitrogen Metabolismn molecular interaction networks is an indicator of functional association, such sets can be identified from connected induced subgraphs of molecular interaction networks. Applications typically quantify the relevance (e.g., modularity, conservation, disease association) of connected subnetworks usi作者: Integrate 時間: 2025-3-28 03:15 作者: 蒙太奇 時間: 2025-3-28 09:36 作者: 大廳 時間: 2025-3-28 13:05 作者: Conquest 時間: 2025-3-28 17:31 作者: 爭論 時間: 2025-3-28 21:42
Stil und Haltung Wolfgang Kayser biological constraints. A . is a directed graph representing positive and negative gene regulations. Depending on the biological problem being solved, the . can vary, and may include, for example, a desired set of stationary states. We present a ., SAT-based, method for inferring synchronous Boolea作者: multiply 時間: 2025-3-29 02:59
Der Mechanismus der Nitratassimilation,o computational biology, lists the most common ways of assigning function to the new genes, particularly those that specifically rely on comparative genome analysis, and briefly reviews the drawbacks of the current algorithms for semi-automated high-throughput functional annotation of genomes.作者: Morose 時間: 2025-3-29 05:38 作者: 樂器演奏者 時間: 2025-3-29 07:21
Protein symplexes (Conjugated proteins)n algorithms of factor two for three new problems: when prefix and suffix reversals are allowed, when prefix reversals and prefix transpositions are allowed, and when prefix and suffix reversals and prefix and suffix transpositions are allowed.作者: SLAY 時間: 2025-3-29 13:59 作者: tic-douloureux 時間: 2025-3-29 19:38
Regulation der Nitratreduktase,nts to be clustered. Both methods are not capable to handle large point sets. In this paper, we give an algorithm with a space requirement of . which is able to cluster one million points in a day on current commodity hardware.作者: 良心 時間: 2025-3-29 22:35 作者: 顛簸地移動 時間: 2025-3-30 03:55 作者: 沒花的是打擾 時間: 2025-3-30 05:26 作者: conflate 時間: 2025-3-30 10:15
Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem alternatively in the matching and outside the matching, and satisfying a given constraint on the numbers of cycles and paths. We show that this problem is .-complete, even in bipartite graphs. We also exhibit non-approximability and polynomial-time approximation results, in the optimization versions of the problem.作者: 原諒 時間: 2025-3-30 13:56 作者: Ibd810 時間: 2025-3-30 17:03 作者: Cultivate 時間: 2025-3-30 23:18
https://doi.org/10.1007/978-3-662-06547-1 outliers, that is, the most active, reactive, buffering and critical genes in the network. Numerical examples for different datasets containing mRNA transcript levels during the cell cycle of budding yeast are presented.作者: 惰性氣體 時間: 2025-3-31 01:41
Die Regulation der Nitritreduktase,n of the refined model. We conclude that Bionetgen (and rule-based modeling in general) is well-suited for a compact representation of the refined model, Petri nets offer a good solution through the use of colors, while the PRISM refined model may be much larger than the basic model.作者: 油氈 時間: 2025-3-31 05:33
Die Serologie der pflanzlichen Eiwei?k?rperm. This material is hoped to be valuable to theoreticians as they develop new formulations of SAP as well as of guidance to developers of new pipelines and algorithms for sequence assembly and variant detection.作者: hematuria 時間: 2025-3-31 10:06 作者: Creatinine-Test 時間: 2025-3-31 15:14 作者: Fecundity 時間: 2025-3-31 18:43 作者: meritorious 時間: 2025-3-31 21:50 作者: Meditative 時間: 2025-4-1 02:08
Inference of Boolean Networks from Gene?Interaction Graphs Using a SAT Solveratisfying these formulas corresponds to a Boolean network modeling the given information. Next, we employ a SAT solver to obtain desired Boolean networks. Through a prototype, we show results illustrating the use of our method in the analysis of Boolean gene regulatory networks of the . root stem cell niche.作者: Odyssey 時間: 2025-4-1 09:05 作者: Etching 時間: 2025-4-1 12:36
